'arize' 검색 결과

Reads, inspects, and writes Flow Cytometry Standard (FCS) files from conventional, spectral, and mass cytometry (CyTOF), and parses FlowJo/Cytobank/Diva workspaces. Covers FCS 2.0/3.0/3.1/3.2 internals ($PnE linear-vs-log, $DATATYPE, $SPILLOVER vs SPILL vs $COMP, $TIMESTEP), channel/parameter metadata, the silent linearize/truncate defaults, and R (flowCore, flowWorkspace, CytoML) plus Python (FlowKit, readfcs) readers. Use when loading flow or mass cytometry data, mapping detector channels to antibodies, extracting the event matrix, choosing a reader, or bridging FCS to the scanpy/AnnData ecosystem before preprocessing.

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Stores and operates on sparse expression matrices for single-cell and large bulk RNA-seq, covering dgCMatrix/dgRMatrix/dgTMatrix when-each-is-fast, the dgCMatrix (CSC, R) <-> CSR (Python) implicit transpose, AnnData (cells-rows) <-> SingleCellExperiment (cells-cols) orientation flip, HDF5/h5ad vs Zarr cloud-native shift, HDF5SummarizedExperiment + DelayedArray for out-of-memory bulk, scanpy backed mode for large h5ad, the ~10-15% density crossover where dense beats sparse, 10X format proliferation (MTX vs CellRanger H5 vs h5ad), the dense-conversion memory blow-up, and Dask + Zarr for consortium-scale matrices. Use when choosing sparse format, working with single-cell-sized matrices, importing/exporting 10X, debugging R/Python interop transposes, processing matrices too large for RAM, or building cloud-native pipelines.

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Segments the genome into chromatin states from combinatorial histone modification and chromatin factor ChIP-seq data. Uses ChromHMM (multivariate HMM on binarized signal, v1.27), Segway (Dynamic Bayesian Network on continuous signal), EpiSegMix (flexible-distribution HMM with duration modeling, 2024), EpiLogos (multi-biosample visualization), IDEAS (cell-type-aware joint), and full-stack ChromHMM (Vu Ernst 2022) for cross-cell-type segmentations. Handles state-count selection (15 vs 18 vs 25 states), binarization choice, OverlapEnrichment / NeighborhoodEnrichment downstream analysis, and cross-biosample integration. Use when learning chromatin states from a histone mark panel, characterizing learned states by genomic feature enrichment, or comparing chromatin landscapes across cell types.

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Extract exactly what the person typed in a Claude Code session (script, no agent context spent), have a fresh agent write a faithful structured summary under it, and optionally have an adversarial agent judge whether the working agent is still on track. Use at a checkpoint, before a handoff, after a compaction, when a long session may have drifted from what the owner asked, or when told to 'summarize what I said' or 'check we're on track'.

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Use when the user asks to inspect Sentry issues or events, summarize recent production errors, or pull basic Sentry health data via the Sentry API; perform read-only queries with the bundled script and require `SENTRY_AUTH_TOKEN`.

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Automatically fetch YouTube transcripts, generate structured summaries, and send full transcripts to messaging platforms. Use when a request includes YouTube URLs and needs metadata, key insights, or downloadable transcripts.

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[52] EXECUTE. Three-stage refactoring workflow: (1) iterative research of refactor/modularization options, (2) plan + risk/edge-case analysis + Scope150 validation, then implement with tests after user confirmation, and (3) apply Scout105 cleanup protocol. Use when asked to refactor, modularize, or restructure code safely.

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Generates user-facing changelogs and release notes from git commit history. Parses conventional commits, categorizes changes into features, fixes, breaking changes, and more, then rewrites technical messages into customer-friendly language. Use when the user asks to generate a changelog, write release notes, summarize recent commits, prepare CHANGELOG.md, or document what changed between versions.

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Search and monitor arXiv papers. Query by topic, author, or category. Track new papers, download PDFs, and summarize abstracts for research workflows.

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Local-first insurance record organizer for tracking policies, renewals, claims logs, and related insurance records. Use when the user wants to store policy details, list recorded policies, track renewal dates, log claim events, or summarize insurance records. NEVER provides insurance advice, recommends coverage amounts, or facilitates policy purchases.

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Research synthesis from sources — "summarize these URLs or papers", "research this topic with these sources", "create a podcast about", "audio overview", "mind map", "quiz from these sources", "flashcards", "deep research on". Wraps Google NotebookLM via notebooklm-py.

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Structure AI work artifacts under .aiwork/{YYYY-MM-DD}_{slug}/ folders using the project's protocol (intent, triage, research, spec, prd, areas, plan, review, notes, docs/). Use when the user asks to plan, capture an intent, make a spec, triage, research a task, write a report, code review, summarize findings, save the work, document decisions, record this, write that down, persist findings, or references any path under .aiwork/. Also use when starting a non-trivial task that needs a plan or spec before implementation, or when finishing one and capturing notes.

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Summarize the current state of the git repository

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INVOKE THIS SKILL when optimizing, improving, or debugging LLM prompts using production trace data, evaluations, and annotations. Covers extracting prompts from spans, gathering performance signal, and running a data-driven optimization loop using the ax CLI.

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Operate the Teams meeting summary pipeline via Hermes CLI — summarize meetings, inspect pipeline status, replay jobs, manage Microsoft Graph subscriptions.

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Phase 4 of the Forge pipeline. Summarize the whole workload — what was built, which Beads issues closed, a before/after, and a step-by-step walkthrough the user can run to verify it themselves — then run quality gates, push, and open the PR. Use when starting /forge-ship or the ship step of /forgemaster.

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Batch-generate Dreamifly images/videos from prompt queues. Use when the user asks to batch-generate images, edit images with references, create text-to-video or image-to-video, validate or estimate Dreamifly job cost, retry failed media jobs, or summarize Dreamifly outputs.

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批量调用 Dreamifly 生成并下载图片或视频。Use when the user asks to batch-generate images, edit images with references, create text-to-video or image-to-video, queue prompts, validate or estimate generation cost, retry failed media jobs, or summarize Dreamifly outputs.

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Produces a compact KPI digest showing how key metrics changed over a period and what's driving the movement. Use this skill when someone asks for a performance summary, a weekly recap, a morning briefing, a KPI update, or any variation of "how did we do this week/month." Also trigger for requests like "give me a performance overview," "what moved in the last 7 days," "pull our KPI report," or "summarize our metrics."

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Create a punchy sizzle reel from a video using Adobe Quick Cut. Use this skill whenever a user wants to cut, trim, or shorten a video into highlights — including phrases like "make a sizzle reel", "make a highlight reel", "quick cut this", "cut the best parts", "shorten this video", "make a highlight clip", "summarize this video visually", or any request to produce a shorter edited version of a video. Use this skill for Quick Cut requests before suggesting manual editing in Premiere. Requires the user to upload a video file.

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Produces a compact KPI digest showing how key metrics changed over a period and what's driving the movement. Use this skill when someone asks for a performance summary, a weekly recap, a morning briefing, a KPI update, or any variation of "how did we do this week/month." Also trigger for "give me a performance overview," "what moved in the last 7 days," "pull our AA KPI report," or "summarize our metrics."

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Scans repository structure and generates comprehensive architecture documentation including system overview, entry points, module relationships, data flow diagrams, and "edit here for X" guides. Creates ARCHITECTURE.md for onboarding and navigation. Use when users request "document the codebase", "explain the architecture", "create onboarding docs", or "map the system".

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Search and summarize papers from ArXiv. Use when the user asks for the latest research, specific topics on ArXiv, or a daily summary of AI papers.

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Summarize git diffs in plain English

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