'agent-skill' 검색 결과

Work with large scientific arrays by storing data in smaller blocks and reading selected portions. Guides compression, cloud storage, format migration, and NumPy, Dask, or Xarray integration while preserving dimensions, units, and other metadata.

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• Reading selected regions of large scientific arrays
• Choosing data blocks and compression settings
• Working with scientific arrays stored on S3 or GCS

Retrieve U.S. federal financial data from the Treasury’s public API, including debt, revenue, spending, interest rates, and exchange rates. Filter dates and fields, retrieve multiple pages, and organize results into tables for analysis.

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• Tracking U.S. national debt over time
• Comparing monthly federal revenue and spending
• Retrieving Treasury reporting exchange rates

Simulate concentration changes over time from biochemical models in SBML or Antimony, and compare fixed parameter conditions. Checks model units and exports CSV results plus COMBINE archives containing models and experiment settings, then replays them to compare results.

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• Calculate concentration changes in reaction networks
• Compare baseline and altered kinetic parameters
• Inspect model units and consistency warnings

Fit probabilistic models to single-cell measurements for integration across experiments, cell annotation, combined RNA and protein or ATAC analysis, and gene expression comparisons. The skill covers input requirements, training checks, reference mapping, and interpretation of model uncertainty.

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• Integrating single-cell RNA data across experimental batches
• Assigning cell labels using partial annotations or a reference
• Analyzing RNA with protein or ATAC measurements

Fit regression and time series models in Python, interpret coefficients, compare alternatives, and check model assumptions. Supports statistical diagnostics and forecasting, with confidence intervals and validation steps to assess uncertainty and predictive performance.

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• Fit regression models and interpret coefficients
• Compare models for binary outcomes or counts
• Forecast time series with prediction intervals

Explain how input features contribute to machine-learning predictions using SHAP. Select an explanation method and reference data, validate contributions against model outputs, and create charts for individual predictions or patterns across samples, including models with multiple outputs.

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• Explaining the feature contributions behind one prediction
• Visualizing attribution patterns across evaluation samples
• Selecting and explaining a class in a multiclass model

Stress-test research plans by comparing possible scenarios, such as sample losses, unavailable materials, or methods failing to transfer. Record assumptions and evidence, compare response options, and define contingency plans and observable triggers for changing course.

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• Plan responses to higher-than-expected sample losses
• Prepare backups for unavailable reagents or datasets
• Compare research options under resource constraints

Create static statistical charts from pandas tables to explore distributions, relationships, and group differences. Supports scatter plots, regression displays, pair plots, and heatmaps, with explicit choices for aggregation, uncertainty, missing data, and visual styling.

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• Exploring distributions and relationships in tabular data
• Comparing group differences with box or violin plots
• Visualizing correlation matrices as heatmaps

Plan study sample sizes, estimate statistical power—the chance of detecting an assumed effect—and find the smallest detectable effect. Supports standard tests and simulations for complex designs, with sensitivity analyses and sample size justifications.

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• Estimating participant or sample counts before data collection
• Finding the smallest effect detectable with a fixed sample
• Preparing sample size justifications for grants or protocols

Analyze experimental or survey data with guidance on choosing statistical tests, checking assumptions, estimating effect sizes and uncertainty, planning sample sizes, and writing results in APA style, a standard format for research reporting.

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• Comparing outcomes between experimental groups
• Examining relationships in survey data
• Planning the number of study participants

Run protein structure prediction, molecular design, and docking tools on Tamarind Bio without a local GPU. Guides tool selection, input validation, job submission, batch processing, and result retrieval through its REST API or MCP server.

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• Predicting protein structures in the cloud
• Running binder or antibody design tools
• Submitting batches of sequences for analysis

Use SymPy to simplify expressions, solve equations, and calculate derivatives, integrals, and matrices with exact symbolic results. Specify assumptions, verify solutions, and turn mathematical expressions into numerical functions, source code, or LaTeX output.

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• Solving equations and checking their solutions
• Calculating symbolic derivatives, integrals, and limits
• Finding matrix eigenvalues with exact arithmetic

Estimate RNA velocity, the modeled direction of gene expression change, from single-cell spliced and unspliced counts. Fit models, inspect gene-level plots, visualize trajectories, and explore relative timing and associated genes while checking model limitations.

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• Explore hypotheses about directions of cell-state change
• Inspect gene-level RNA velocity model fits
• Estimate relative cell ordering with a dynamical model

Work with genomic regions in Polars tables to find overlaps, nearby regions, covered bases, and gaps. Read and write bioinformatics files, query data with SQL, and check coordinate conventions when joining datasets or migrating from bioframe.

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• Finding variants that overlap genomic regions
• Merging regions and measuring covered bases
• Summarizing sequencing read depth

Build Bayesian models in PyMC to estimate effects and quantify uncertainty. Fit regression or hierarchical models, check sampling diagnostics, assess predictions against observed data, predict new groups, and compare models using predictive performance.

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• Estimate regression effects with uncertainty
• Model differences across patients or groups
• Inspect sampling diagnostics and predictive checks

Build Python workflows for filtering, grouping, joining, and reshaping table data with Polars. Get guidance on migrating pandas code and using lazy evaluation, which optimizes a processing plan before execution, for large datasets.

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• Filtering and summarizing large CSV files
• Migrating pandas processing code to Polars
• Joining and reshaping multiple tables

Create and review scientific figures with Matplotlib, Seaborn, or Plotly. The skill covers panel layouts, uncertainty, missing data, accessible color choices, and exported file checks, helping prepare figures for papers, presentations, or web publication.

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• Create multi-panel figures for a paper
• Show uncertainty and missing observations clearly
• Review palette contrast and color-independent cues

Organize PyTorch models and data pipelines with PyTorch Lightning, automate training, save checkpoints, and track experiments. Includes templates and guidance for configuring training across multiple GPUs or TPUs.

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• Restructure PyTorch training code into LightningModules
• Build reusable data preparation and loading pipelines
• Configure checkpoints, early stopping, and experiment logs

Set up and customize Pi, a terminal coding agent framework. This skill guides model configuration, extension development, terminal interfaces, and integration with other applications through its SDK, a software development kit, or process messaging.

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• Install Pi and configure model access
• Create custom tools and terminal interfaces
• Embed Pi in another application

Create an editable, single-slide PowerPoint research poster from author-approved local text and images. Check physical dimensions, image resolution, contrast, reading order, and file security, with reports to support manual review and printing.

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• Create an editable PowerPoint conference poster
• Check print dimensions and image resolution
• Review contrast, reading order, and alternative text

Use PathML for local pathology image research, from loading whole-slide images and splitting them into tiles to preprocessing and quality checks. Plan multiplex measurements, analyze spatial relationships between cells, and run model inference in bounded batches.

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• Planning tile extraction from whole-slide images
• Reviewing preprocessing and image quality
• Validating multiplex measurements and spatial graphs

Find biological pathways and functions enriched in gene lists or ranked gene data. Choose an appropriate statistical method, align gene identifiers, define comparison backgrounds, and turn results into interpretable tables and plots with multiple-testing corrections.

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• Finding enriched pathways among differentially expressed genes
• Running GSEA on a complete ranked gene list
• Calculating gene-set scores for individual samples or cells

Retrieve, validate, and export protocols.io experimental procedures while preserving version and attribution details. Check saved JSON offline, save protocol PDFs, or prepare reviewable plans for updates and publication; bundled scripts do not execute changes.

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• Retrieve a specific version of an experimental protocol
• Validate saved protocol JSON offline
• Export a protocol as a PDF

Analyze single-cell RNA-seq data with Scanpy, from quality checks and normalization to cell grouping, exploratory marker genes, and plots. Bundled scripts also prepare sample-level count summaries and support conversion of R objects to h5ad.

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• Check data quality and normalize single-cell measurements
• Visualize cell groups with UMAP or t-SNE
• Explore marker genes and review cell-type labels