'cluster' 검색 결과

Infers person-to-person transmission from pathogen genomes using outbreaker2 (Campbell 2018), TransPhylo (Didelot 2017), phybreak (Klinkenberg 2017), BadTrIP (De Maio 2018), SCOTTI (De Maio 2016), BEASTLIER (Hall 2015), and SNP-distance / cluster-picker approaches (HIV-TRACE for HIV; transcluster). Defines outbreak clusters using pathogen-specific SNP thresholds (NOT a universal cutoff -- TB <=12 SNPs / Walker 2013; MRSA <=15 / Coll 2017; C. difficile <=2 / Eyre 2013; Klebsiella <=21 / Snitkin 2012), models within-host diversity and transmission bottlenecks (Worby-Lipsitch-Hanage 2014; McCrone 2018; Sobel Leonard 2017; Lythgoe 2021 SARS-CoV-2), integrates contact-tracing data, distinguishes generation interval from serial interval (Britton & Scalia Tomba 2019; Ali 2020), attributes source via Bayesian source attribution (Mather 2013 DT104; islandR), and reconciles transmission-network reconstruction with epi metadata. Use when investigating outbreaks for who-infected-whom, defining SNP-cluster outbreak definitions, accounting for unsampled intermediates, choosing between outbreaker2 (rich epi data) and TransPhylo (genomic-only after dated phylogeny), running source attribution between host populations, calling HIV-TRACE thresholds appropriate to the local subtype, or distinguishing recent transmission from reactivation in TB / chronic HIV.

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여러 머신으로 구성된 Uncloud에서 서비스를 배포하고 관리합니다. uc CLI로 공개 포트, Caddy 설정, 복제본 수 조정, 로그 확인과 볼륨 관리를 진행합니다.

• Compose 파일로 서비스 배포
• 웹 앱을 HTTPS로 공개
• NAS나 라우터로 연결되는 경로 설정

Organize a GitHub issue backlog by shared root cause, with one main tracking issue and design document per group. Route new reports into existing plans and prepare pull requests that address related bugs together with regression checks.

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• Consolidating bug reports that share a root cause
• Turning an issue backlog into a repair roadmap
• Routing new bugs into existing plans

Reduce data with many features into fewer dimensions using UMAP. Create 2D or 3D views, prepare inputs for clustering, compare parameter settings, and project new samples while checking whether the results remain stable and meaningful.

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• Visualizing data with many features in 2D or 3D
• Preparing reduced features for HDBSCAN clustering
• Guiding dimensionality reduction with partial labels

Process molecular datasets in Python through a simpler interface to RDKit, a chemistry toolkit. Convert and standardize structures, calculate molecular properties, compare and cluster compounds, generate 3D conformations, and visualize results for drug discovery workflows.

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• Load and standardize molecular datasets
• Calculate molecular properties and similarities
• Cluster compounds and select diverse subsets

Set up and run kube-bench to check Kubernetes configuration against CIS security benchmarks. Select the appropriate benchmark and cluster components, then export JSON or JUnit results for automated pipelines and troubleshoot skipped checks or incorrect detection.

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• Setting up kube-bench for the first time
• Selecting benchmark versions and scan targets
• Exporting JSON or JUnit results for CI

Analyze Kubernetes API server audit logs to identify pod access, secret reads, permission changes, privileged pods, and anonymous requests. Use the event patterns to reconstruct suspicious activity and develop detection rules for security monitoring systems.

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• Tracing API activity during a suspected cluster compromise
• Reviewing access to Kubernetes secrets
• Investigating permission changes and privileged pods

Set up and manage AlloyDB for PostgreSQL clusters, instances, and backups. Includes guidance for MCP integration, a way for agents to operate databases, plus references for application connections, Terraform, authentication, and AI search capabilities.

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• Create an AlloyDB cluster and primary instance
• Manage AlloyDB backups
• Automate database operations through MCP

Plan what content to create using business goals, customer questions, and competitor gaps. Organize related topics, prioritize ideas for search or sharing, and turn them into content calendars or briefs with clear audiences and purposes.

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• Planning core themes for a company blog
• Prioritizing topics from customer questions
• Grouping related articles into topic clusters

Adjust application capacity on GKE through manual scaling, HPA for changing the number of running pods, and VPA for adjusting CPU and memory allocations. Includes configuration templates and a workflow for reviewing resource requests against actual usage.

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• Scale application capacity automatically as demand changes
• Review CPU and memory allocations against actual usage
• Change the number of application replicas manually

Create and validate Terraform alerts for GKE using PromQL, a monitoring query language. Cover response times, errors, traffic, memory usage, and cluster health, with checks for alert timing, duplicate signals, and metric ingestion costs.

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• Create alerts for GKE service latency and errors
• Detect frequent container restarts and unhealthy nodes
• Review existing Terraform alert configurations

Diagnose failures in GKE HorizontalPodAutoscaler (HPA), which adjusts Pod counts automatically. Investigate missing metrics, unexpected scaling behavior, and slow reactions, then receive proposed configuration fixes or commands for review before deployment.

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• Investigating unknown metrics and HPA errors
• Diagnosing workloads that will not scale up or down
• Troubleshooting scaling to and from zero

Configure Backup for GKE to protect Kubernetes configurations and persistent data. Set backup schedules, retention periods, and customer-managed encryption keys, then prepare restore plans with explicit policies for handling existing resources.

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• Setting scheduled backups and retention periods
• Backing up persistent data and Secrets
• Encrypting backups with customer-managed keys

Finds the base image needed to create a custom GKE node image. It translates requirements such as GKE version, operating system, processor architecture, accelerators, and sandbox settings into a matching image name.

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• Finding a base image for custom GKE nodes
• Looking up images for GPU or TPU configurations
• Matching images to COS, Ubuntu, ARM64, or X86_64

Plan and configure a shared GKE cluster for multiple teams or environments. Set up namespaces, team permissions, resource limits, and network separation, then use labels and GKE cost allocation to track spending by team.

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• Design a GKE cluster shared by multiple teams
• Separate development, staging, and production workloads
• Set team permissions and resource quotas

Diagnose why GKE Pods cannot authenticate to Google Cloud APIs. Inspect cluster settings, service account bindings, resource permissions, and metadata server health, then provide evidence and concrete fixes for a human to apply.

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• Investigate Pod authentication failures and 403 errors
• Check Kubernetes service account identity bindings
• Diagnose metadata server connectivity problems

Review BigQuery capacity, table layouts, storage retention, and SQL to improve cost efficiency. Compare billing options, plan partitioned tables, and evaluate search indexes, stored aggregation results, and BI Engine for suitable workloads.

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• Compare On-Demand pricing with Editions
• Review storage billing models and retention periods
• Design table partitioning and clustering

Create and administer AlloyDB for PostgreSQL databases, including clusters, instances, backups, secure connections, and access permissions. It also covers command-line operations, infrastructure configuration, and MCP tools that let agents automate database tasks.

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• Create an AlloyDB cluster and primary instance
• Manage backups and plan recovery
• Configure secure connections and access permissions

Install, upgrade, and remove the ingress-nginx-based KubeSphere Gateway extension, which manages external access to applications. Inspect gateways across cluster, workspace, and project scopes, and investigate stalled operations, Helm installation failures, or pod problems.

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• Installing or upgrading the Gateway extension
• Checking gateways by cluster, workspace, or project
• Investigating stalled gateway operations and pod failures

Manage KubeSphere’s Traefik-based Gateway API extension for external access to applications. Install, upgrade, or remove it across selected clusters, and inspect GatewayProxy resources, which manage proxy instances, to investigate deployment failures and unhealthy gateways.

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• Install or upgrade the extension on selected clusters
• Inspect GatewayProxy status by scope
• Investigate Traefik startup and update failures

Inspect live development or staging traffic to find an identifier that distinguishes one developer’s requests across services. Produce a matching mirrord HTTP filter and a report showing where the identifier survives, disappears, or cannot be observed.

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• Find a filter for personal requests on a shared staging cluster
• Check whether request IDs survive across services
• Build mirrord filters using JWT claims or cookies

Install and configure mirrord Operator for team use on Kubernetes. The skill covers licensing, access permissions, feature settings, internal registries, and offline deployments, with guidance for upgrades and troubleshooting across supported cluster platforms.

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• Install mirrord Operator for a development team
• Configure cloud authentication or offline licensing
• Enable preview environments and database branches

Use scGPT to convert single-cell gene expression data into numerical representations of cells and genes. These representations support clustering, data integration, cell-type annotation, and analyses of gene perturbations or regulatory relationships.

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• Creating cell representations from AnnData
• Preparing single-cell data for clustering and integration
• Annotating cell types with or without fine-tuning

Use when deploying an existing web application or API to an already-running Azure Kubernetes Service cluster. Detects the framework, generates a Dockerfile and Kubernetes manifests, validates against AKS Deployment Safeguards, and deploys with verification. WHEN: deploy app to AKS, deploy to existing AKS cluster, containerize app for Kubernetes, generate K8s manifests for Azure, set up CI/CD for AKS, my AKS deployment is failing safeguard checks, I have a Django/Express/Spring Boot app to run on AKS. DO NOT USE FOR: creating or provisioning an AKS cluster (use azure-kubernetes), assessing migration to AKS Automatic (use azure-kubernetes-automatic-readiness), or deploying to non-AKS targets like Web Apps, Container Apps, or Functions.

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