Orchestrates an end-to-end immune-repertoire pipeline from FASTQ to clonotypes, diversity, overlap, somatic hypermutation and lineages, routing on two forks. Use when deciding bulk vs single-cell (bulk amplicon/RNA-seq -> MiXCR analyze preset -> VDJtools/immunarch depth-normalized diversity and overlap -> figures; 10x paired VDJ -> MiXCR 10x preset or Cell Ranger -> scirpy gene-expression integration, chain QC, clonotype clusters); and TCR vs BCR (TCR -> exact CDR3-nt+V/J clonotypes, VDJtools diversity is fine; BCR -> somatic hypermutation makes exact clonotypes wrong -> Immcantation distToNearest/findThreshold clonal clustering, germline reconstruction, SHM, Dowser lineages); selecting the MiXCR 4.x preset by chemistry and activating its license; downsampling to equal depth before comparing diversity or overlap; and optionally annotating antigen specificity.
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huang-sh/DeepScience☆ 42026년 7월 15일 업데이트
Hermes Agent (Nous Research の AI CLI エージェント)。インストール、 CLI コマンド (chat, model, gateway, config, cron, webhook, mcp, skills, profile, hermes pm)、 Configuration (Terminal Backends, Memory, TTS / STT, Auxiliary Models, Compression, Display, Local Models llama.cpp, Egress / Secrets)、 Features (Tools, Skills, Hooks, Delegation, Kanban, Cron, Voice Mode, Personality, Context Files)、 Messaging Gateway (Platform Support, Bot Mode, Connectors)、Security、Architecture、 Hermes Desktop、Plugin Catalog、Profiles、Developer Guide、Nous Portal (Tool Gateway)。
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Fandhe-AI/agent-reference-skills☆ 42026년 10월 20일 업데이트
Claude Code (code.claude.com) の拡張機能リファレンス。 Agent Skills (SKILL.md), slash commands, output styles, subagents (cross-session messaging), agent teams, agent view, workflows, routines, scheduled tasks, hooks (PreToolUse / PostToolUse), mods (Claude Code mods), plugins, plugin eval, plugin marketplace (marketplace.json), MCP 設定 (.mcp.json / claude mcp add), managed MCP, channels (--channels / claude/channel push events, webhook / telegram / discord / imessage), tools-reference, advisor, ultrareview。
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Fandhe-AI/agent-reference-skills☆ 42026년 10월 20일 업데이트
Analyze a Coval accent testing report from runs across different speaker accents. Use when a user provides a Coval report URL, report export, run IDs, screenshots, or metric summary and wants evidence-backed next steps such as prompt changes, STT/confirmation adjustments, accent-robust routing, or expanded accent coverage.
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coval-ai/coval-external-skills☆ 32026년 9월 16일 업데이트
Improve Coval trace quality after basic ingestion works. Use when traces are sparse, missing useful STT/LLM/TTS/tool spans, missing attributes needed for Coval built-in metrics, or when a customer wants maximum debugging and observability value from agent traces.
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coval-ai/coval-external-skills☆ 32026년 9월 16일 업데이트
Analyze a Coval audio-quality testing report from runs across different voice, speaking-style, volume, interruption, and background-noise scenarios. Use when a user provides a Coval report URL, report export, run IDs, screenshots, or metric summary and wants evidence-backed next steps such as prompt changes, tool handling fixes, STT/TTS adjustments, trace setup, or expanded audio-scenario coverage.
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coval-ai/coval-external-skills☆ 32026년 9월 16일 업데이트
The TTS/STT/audio-playback system behind the one `speak()` entry point. Use when working on read-aloud, the Listen panel, voice/speed settings, transcription, mic capture, SpeakerButton, iOS playing silence, audio API routes, or files in features/audio/, features/tts/, hooks/tts/, app/api/audio/.
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armanisadeghi/ai-matrx☆ 32026년 10월 21일 업데이트
Use when Codex needs to understand or respond to automatic comment-checker feedback emitted after an edit-like PostToolUse hook.
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code-yeongyu/codex-comment-checker☆ 32026년 10월 16일 업데이트
Use when GitHub may have shipped a GraphQL schema update affecting timeline event unions (PullRequestTimelineItems / IssueTimelineItems), when the gh-timeline dispatcher fallback is hitting more than expected, before a gh-timeline release, or when the user requests phrases like "verify timeline coverage", "audit gh-timeline schema", "check for new timeline events", "GitHub schema changed". Walks through schema diff → patch → test update → live verification → optional fixture refresh, marking each spot where a human decision is required.
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sushichan044/gh-timeline☆ 22026년 5월 25일 업데이트
Claude Code hook system for pre/post tool execution. Triggers on: hooks, PreToolUse, PostToolUse, hook script, tool validation, audit logging.
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jcasnellie69/homelab-config☆ 22026년 10월 16일 업데이트