'prediction' 검색 결과

Fix Monte Carlo project completion simulations that give identical dates for all sub-groups (milestones, priorities, epics). Use when: (1) All sub-group predictions converge to the same date despite different remaining counts, (2) Proportional throughput scaling produces flat/identical results, (3) Applying overall scope rate to individual sub-groups causes simulations to hit max_weeks cap and never converge, (4) Building project forecasting tools that predict completion for sub-groups of a larger backlog. Covers hypergeometric draw model for milestones and cumulative priority model for sequential priorities.

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Predict protein-coding genes in eukaryotic genomes using BRAKER3 for combined RNA-seq and protein evidence, or GALBA for protein-only evidence. Runs Augustus with trained parameters for accurate gene models. Use when annotating a newly assembled eukaryotic genome or improving existing gene predictions.

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Predict RBP binding from RNA sequence using deep learning models (RBPNet sequence-to-signal, RNAProt RNN, GraphProt2 GCN with structure, DeepCLIP, DeepRiPe multi-modal CNN) for variant-effect prediction, in silico binding-site discovery, model interpretation, and transfer learning from CLIP and RBNS datasets. Use when computational prediction of RBP binding from sequence is needed, evaluating variant effects on binding without further wet-lab experiments, comparing model performance, or training a custom model on ENCODE eCLIP data.

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Trains and applies base-resolution deep learning models on ChIP-seq / ChIP-nexus / CUT&RUN data. Uses BPNet (Avsec 2021 Nat Genet 53:354; soft motif syntax from ChIP-nexus), chromBPNet (Pampari A et al 2025 Nat Genet; bias-factorized base-resolution profiles), EnFormer (Avsec 2021 Nat Methods 18:1196; 196 kb input, ~100 kb effective receptive field), DeepSEA (Zhou 2015; multi-task CNN), and JASPAR 2026 deep-learning collection (1259 BPNet ChIP models). Performs in silico mutagenesis for variant-effect prediction, DeepLIFT/Grad attribution, and TF-MoDISco motif discovery from attribution scores. Use when predicting variant effects on TF binding, discovering soft motif syntax / cooperativity, integrating ChIP-seq with sequence-only predictions, or applying precomputed JASPAR Deep Learning models to new variants.

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Access and analyze AlphaFold protein structure predictions. Use when predicted structures are needed for proteins without experimental structures, or for confidence scores (pLDDT).

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Binder design ranking using ipSAE (interprotein Score from Aligned Errors). Use this skill when: (1) Ranking binder designs for experimental testing, (2) Filtering BindCraft or RFdiffusion outputs, (3) Comparing AF2/AF3/Boltz predictions, (4) Predicting binding success rates, (5) Need better ranking than ipTM or iPAE. For structure prediction, use chai or alphafold. For QC thresholds, use protein-qc.

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ESM2 protein language model for embeddings and sequence scoring. Use this skill when: (1) Computing pseudo-log-likelihood (PLL) scores, (2) Getting protein embeddings for clustering, (3) Filtering designs by sequence plausibility, (4) Zero-shot variant effect prediction, (5) Analyzing sequence-function relationships. For structure prediction, use chai or boltz. For QC thresholds, use protein-qc.

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Use when a task asks for a model, a score, a forecast or a prediction-driven feature — pin down the decision, target, unit, prediction time, metric and baseline before writing any modelling code

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Analyze agricultural climate risk systems for weather impact modeling, crop insurance, drought/flood prediction, soil moisture, and carbon tracking. Use when: 'assess crop climate risk', 'evaluate weather yield models', 'review crop insurance integration', 'audit drought prediction', 'check carbon sequestration tracking', 'analyze farm adaptation planning', 'evaluate DSSAT or APSIM models'.

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Participate in DojoZero prediction games, including NBA and FIFA World Cup trials. Use when user wants to find games, join them, check scores/odds, place bets or prediction-window picks, or view leaderboards.

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DiffDock and DiffDock-L diffusion-based molecular docking. Use for blind protein-small-molecule pose prediction from a PDB file or sequence plus SMILES/SDF/MOL2, batch docking over a CSV of complexes, virtual screening triage, sampling multiple poses per complex, and reading the confidence score correctly. Also trigger on DiffDock, DiffDock-L, inference.py, confidence_model, samples_per_complex, ESM embedding preparation for docking, or blind docking without a defined box. Not for binding affinity prediction — the confidence score ranks pose plausibility, not potency.

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Access a collection of open-source molecular design and structural biology tools on the Tamarind Bio platform, via its REST API or MCP server — no local GPUs required. Tamarind bundles popular open-source models for structure prediction (AlphaFold, Boltz, Chai, ESMFold), protein, binder, and de novo design (RFdiffusion, ProteinMPNN, BoltzGen), antibody and nanobody design and developability, protein-ligand docking (DiffDock, Autodock Vina), binding-affinity prediction, MSA generation, and molecular dynamics. Use when the user mentions Tamarind or tamarind.bio, wants to run any of these open-source tools in the cloud, references app.tamarind.bio/api or the x-api-key header, or needs to submit batches of sequences for structural or biophysical characterization.

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Molecular ML with diverse featurizers and pre-built datasets. Use for property prediction (ADMET, toxicity) with traditional ML or GNNs when you want extensive featurization options and MoleculeNet benchmarks. Best for quick experiments with pre-trained models, diverse molecular representations. For ready-made ADMET numbers without training a model use admet-prediction; for benchmark datasets and task-aware splits use pytdc.

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Feed actual task results back into agent memory for calibration. Compares predicted vs actual outcomes, records accuracy scores, and tracks estimation quality, prediction quality, and decision quality over time to improve future agent performance.

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Build Solana trading applications combining DFlow trading APIs with Helius infrastructure. Covers spot swaps (imperative and declarative), prediction markets, real-time market streaming, Proof KYC, the DFlow Agent CLI for autonomous trading, transaction submission via Sender, fee optimization, shred-level streaming via LaserStream, and wallet intelligence.

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"Build employee turnover prediction models to identify flight risk and retention drivers. Use this skill when the user needs to predict which employees are likely to leave, identify retention risk factors, or prioritize HR interventions — even if they say 'attrition prediction', 'who is going to quit', or 'employee retention model'.".

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Audit pharmaceutical yield prediction systems and process analytical technology -- evaluate critical process parameter (CPP) to critical quality attribute (CQA) relationships, design space characterization per ICH Q8(R2) Quality by Design, PAT sensor readiness (NIR, Raman.

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Analyze disaster prediction and early warning systems — model accuracy for flood, earthquake, wildfire, hurricane, and tsunami hazards, data pipeline reliability from sensor networks and satellite feeds, alert distribution latency and channel coverage.

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Audit transit damage prediction and prevention systems for packaging failure mode analysis, handling chain risk assessment, claims pattern detection, and protection level optimization..

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Analyze consumer modeling systems for purchase prediction, lifetime value estimation, multi-touch attribution, brand affinity, and switching cost analysis. Triggers: 'evaluate CLV model', 'review purchase prediction', 'audit attribution model', 'assess customer lifetime value'.

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ADMET (Absorption, Distribution, Metabolism, Excretion, Toxicity) prediction for drug candidates. Use for assessing drug-likeness, PK properties, and safety risks early in drug discovery. Keywords: ADMET, PK, toxicity, drug-likeness, DILI, hERG, bioavailability

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Deploy smart contracts and bridge assets to Abstract (ZK Stack L2). Use when an agent needs to deploy contracts on Abstract, bridge ETH/tokens to Abstract, trade/swap tokens, place predictions on Myriad Markets, check balances, transfer assets, or interact with Abstract mainnet. Covers zksolc compilation, Hardhat deployment, Relay bridging, DEX trading (Kona, Aborean), Myriad prediction markets, and key contract addresses.

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Expert in temporal event detection, spatio-temporal clustering (ST-DBSCAN), and photo context understanding. Use for detecting photo events, clustering by time/location, shareability prediction, place recognition, event significance scoring, and life event detection. Activate on 'event detection', 'temporal clustering', 'ST-DBSCAN', 'spatio-temporal', 'shareability prediction', 'place recognition', 'life events', 'photo events', 'temporal diversity'. NOT for individual photo aesthetic quality (use photo-composition-critic), color palette analysis (use color-theory-palette-harmony-expert), face recognition implementation (use photo-content-recognition-curation-expert), or basic EXIF timestamp extraction.

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Predict RBP binding from RNA sequence using deep learning models (RBPNet sequence-to-signal, RNAProt RNN, GraphProt2 GCN with structure, DeepCLIP, DeepRiPe multi-modal CNN) for variant-effect prediction, in silico binding-site discovery, model interpretation, and transfer learning from CLIP and RBNS datasets. Use when computational prediction of RBP binding from sequence is needed, evaluating variant effects on binding without further wet-lab experiments, comparing model performance, or training a custom model on ENCODE eCLIP data.

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