'transcript' 검색 결과

Agent 1 of the video editing pipeline. Removes silences and dead air from a talking-head recording. Use when asked to cut silences, trim pauses, remove dead air / gaps, or tighten the pacing of a raw video, given a word-level transcript. Produces an edit list (EDL), a re-timed transcript for downstream agents, and optionally the cut video via ffmpeg. Does NOT cut mistakes, repeats, or false starts — that is the cut-mistakes agent.

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Reads, searches and exports local Claude Code and Kimi CLI history without resuming work: timelines, verbatim user input, keyword or fuzzy recall, file recovery from transcripts, and which session ran a given command in a known time window. Use when the user asks what was said, wants a session ID or original context, needs proof of what a session contained, or needs past-session runtime evidence about commands, tool calls and hook runs — query this index instead of raw-scanning transcript files. Not for Codex (use read-codex-history); with no platform or several named, start at local-conversation-history.

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Fetch existing YouTube transcripts/subtitles or archive spoken video content as text, and download YouTube videos/audio or HLS streams (m3u8) with yt-dlp and ffmpeg. Use for transcript/subtitle retrieval, text-first video archiving, video/audio downloads, protected streams with authentication headers, and download failures including nsig, 403 or browser-cookie issues.

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Create a framing document from conversation transcripts. Use when the user has transcripts (VTT, call notes, etc.) and wants to produce a frame that captures the problem worth solving and why it was chosen over alternatives.

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Turn a shaped project kickoff transcript into a reference document for the builder. Use when the user has a transcript (VTT, etc.) from a kickoff call and wants to produce a document that captures what was shaped and agreed.

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Fetch YouTube transcripts via APIFY API. Works from cloud IPs (Hetzner, AWS, etc.) by bypassing YouTube's bot detection. Free tier includes $5/month credits (~714 videos). No credit card required.

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Discovers, classifies, filters, and quantifies full-length transcript isoforms from PacBio Iso-Seq/Kinnex (HiFi) and Oxford Nanopore (cDNA/direct-RNA) long reads, using the isoseq+pigeon pipeline, SQANTI3, and ONT tools (IsoQuant, FLAIR, Bambu, StringTie2). Covers why a novel isoform is an artifact until proven otherwise (RT template-switching, intra-priming, and 5' degradation manufacture junctions and truncations), the SQANTI3 structural categories and their trust order, the Kinnex skera-split step, orthogonal CAGE/poly-A/short-read-junction validation, and why long-read isoform quantification needs EM. Use when building a full-length isoform catalog, classifying/filtering long-read transcripts, running Iso-Seq or ONT cDNA/dRNA analysis, or judging novel-isoform reliability.

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Parses, queries, converts, and extracts from GTF and GFF3 gene-model annotation files - walking the gene/transcript/exon/CDS hierarchy with gffutils (queryable SQLite DB), converting formats and extracting transcript/CDS/protein FASTA with gffread, slurping to dataframes with gtfparse/pyranges, and sanitizing malformed files with AGAT. Covers the 1-based-inclusive vs 0-based BED coordinate conversion (start-1 only), deriving implicit features (introns/UTRs/TSS), phase-not-frame, the stop-codon-in-or-out-of-CDS convention, and the chr1-vs-1 seqid and gene-ID-version mismatches that silently produce all-zero count matrices and dropped joins. Use when extracting features or sequences from an annotation, converting GTF<->GFF3 or GTF->BED, traversing the gene tree, or diagnosing a coordinate/provenance mismatch upstream of counting or DE.

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Simulate transcription factor perturbation effects on cell state in silico with CellOracle and Dynamo, and predict transcriptional responses to genetic perturbations with GEARS, scGen, and CPA. Covers the direction-not-magnitude principle, local-linear validity, the GRN/velocity error it inherits, baseline discipline (mean and additive baselines), and the validation gap. Use when predicting TF knockout or overexpression effects, ranking driver TFs for fate transitions, or planning perturbation experiments. For GRN construction see multiomics-grn; for experimental Perturb-seq see single-cell/perturb-seq.

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Query the Ensembl REST API for gene/transcript/protein lookup, sequence retrieval, comparative genomics (Compara), variant effect prediction (VEP), regulatory features, and cross-species ortholog/paralog calls. Use when pulling Ensembl-native data (Ensembl Gene IDs, version-pinned releases, archive endpoints for reproducibility), gene/transcript/exon structure with stable IDs, or VEP for variant annotation. Encodes the 15 req/sec rate limit, archive (e110.rest.ensembl.org) for reproducibility, Ensembl divisions (vertebrates / plants / fungi / metazoa / bacteria), and the symbol-vs-ID stability problem.

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Annotate CLIP-seq peaks or crosslink sites to RNA features (5'UTR, CDS, 3'UTR, intron, splice junction, snoRNA, tRNA, ncRNA, repeat elements) with ChIPseeker, RCAS, RBP-Maps (Yeo splicing regulatory maps), and bedtools, applying feature-priority hierarchies, transcript-context resolution, and metagene aggregation. Use when characterizing where in transcripts an RBP binds, comparing peak distribution across regions, generating splicing-regulatory maps relative to alternative-splicing events, or distinguishing exonic vs intronic vs UTR binding.

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Analyzes alternative splicing from PacBio Iso-Seq (HiFi, Kinnex/MAS-Iso-seq) and Oxford Nanopore (direct cDNA, direct RNA, R10.4.1+) long-read RNA-seq with full-isoform resolution. Tools include FLAIR (correct/collapse/quantify/diffSplice for PacBio + ONT), IsoQuant (de-novo or annotation-guided isoform discovery 2024 SOTA), Bambu (annotation-aware Bayesian discovery + quantification with Novel Discovery Rate), SQANTI3 (isoform classification: FSM/ISM/NIC/NNC + artifact flags), rMATS-long (event calling on long-read isoforms), and minimap2 (-ax splice:hq for HiFi; -ax splice -k14 for ONT cDNA; add -uf only for direct RNA or stranded cDNA preps). Solves microexon detection, recursive splicing, complex multi-exon isoforms, and DTU without transcript-quantification uncertainty. Use when short-read AS limitations (anchor length, complex isoforms, microexons, recursive splicing, transcript ambiguity) demand full-isoform resolution.

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Requested GitHub PR/issue agent transcripts: redact, trim, preview, and insert safely.

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Walk a Claude Code session transcript turn-by-turn from Agent Monitor data, summarizing each user, assistant, and tool message in order so a long conversation can be reviewed quickly. Anchors the recap to the session header (model, cost, turn_count). Use when reviewing what was actually said and done in a conversation.

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Use when YouTube is or could be relevant — even if not mentioned: pasted video/channel/playlist links, video IDs, @handles, creator lookups, video summaries, quotes, translations, topic research, tutorials, talks, lectures, expert discussions, product reviews, how-to guides, new product announcements, or anything where video content is fresher or richer than text search. Covers transcripts, video/channel search, channel browsing, playlists, and within-channel search. Not for uploads, account management, or written-source-only research.

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Use when a video needs its spoken words on screen through Scenario via MCP: burned-in styled captions for a TikTok, Reels, or Shorts cut, ad captions for sound-off feeds, YouTube subtitles, an SRT sidecar, transcription of a clip's audio, captions translated into another language, karaoke or word-by-word styles, or restyling and correcting an existing transcript. Keywords: captions, subtitles, SRT, transcribe, karaoke, word-by-word, burn in, closed captions, translate video, caption style.

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SpotClean is a computational method to adjust for spot swapping in spatial transcriptomics data. Recent spatial transcriptomics experiments utilize slides containing thousands of spots with spot-specific barcodes that bind mRNA. Ideally, unique molecular identifiers at a spot measure spot-specific expression, but this is often not the case due to bleed from nearby spots, an artifact we refer to as spot swapping. SpotClean is able to estimate the contamination rate in observed data and decontamin

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hoodscanR is an user-friendly R package providing functions to assist cellular neighborhood analysis of any spatial transcriptomics data with single-cell resolution. All functions in the package are built based on the SpatialExperiment object, allowing integration into various spatial transcriptomics-related packages from Bioconductor. The package can result in cell-level neighborhood annotation output, along with funtions to perform neighborhood colocalization analysis and neighborhood-based ce

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Turn a talking-head video and its transcript into motion-graphic B-roll timed to the speaker's words, in a continuous one-shape style (one element that morphs and never cuts, driven by a cursor, spring motion). Use when someone gives a video (and ideally a transcript) and asks for motion graphics, B-roll, animated cutaways or overlays.

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Download or open videos and recover platform captions, audio transcripts, keyframes, screen text, visual facts, and editing observations as a plain multimodal_transcript.md. Use for Douyin, Bilibili, YouTube, Xiaohongshu, experimental WeChat Channels links, or local video files when preparing complete source material for analysis or downstream Skill distillation.

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Designs customer interviews and turns the transcripts into decisions. Produces an interview guide plus a synthesis (forces of progress, jobs, pathways, opportunities) you can paste into a doc. Use for 'customer interviews', 'discovery calls', 'JTBD', 'switch interview', 'who should I talk to', 'how many interviews', 'synthesize these transcripts', or 'why do customers churn/buy'. Draws on 140 Lenny's Podcast guests incl. Teresa Torres, Bob Moesta and Judd Antin.

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Extract video transcripts: yt-dlp subtitles to clean paragraphs.

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Extract readable transcripts from Claude Code and Codex CLI session JSONL files

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Podcast knowledge workflows powered by Podwise CLI: search podcasts and episodes by keyword, monitor followed shows for new releases, find popular episodes, ask questions and extract insights from transcript content, process Podwise episode URLs, YouTube videos, Xiaoyuzhou links, and local audio or video files to retrieve transcripts, summaries, chapters, Q&A, mind maps, highlights, and keywords — plus catch up on your backlog, refine your listening taste, generate weekly recaps, export episode notes to PKM tools, research topics across podcasts, debate episode ideas, and generate language learning cards. Use when the user wants to find, summarize, transcribe, or extract insights from any podcast or audio content, or manage their listening library.

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