生成图文并茂的分析报告/实验报告/质检报告（固定模版）。当用户要求"生成报告/总结报告/实验报告/质检报告/QC报告"，或分析流程收尾需要交付报告时使用。报告必须基于真实分析输出，包含固定章节结构、关键指标表格和真实结果图。
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peacezha/TRACE32026년 10월 18일 업데이트
무료GitHub에 공개
bioskills
Installs 425 bioinformatics skills covering sequence analysis, RNA-seq, single-cell, variant calling, metagenomics, structural biology, and 56 more categories. Use when setting up bioinformatics capabilities or when a bioinformatics task requires specialized skills not yet installed.
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설치 방법 보기포함된 파일(2)
- SKILL.md3.1 KB
- scripts/install-bioskills.sh4.1 KB
SKILL.md(원문)
설치하기 전에 에이전트에게 전달되는 지시 내용을 확인할 수 있습니다.
bioSkills Installer
Meta-skill that installs the full bioSkills collection (425 skills across 62 categories) for bioinformatics analysis.
Installation
Run the bundled install script to download and install all bioSkills:
bash scripts/install-bioskills.sh
Or install only specific categories:
bash scripts/install-bioskills.sh --categories "single-cell,variant-calling,differential-expression"
What Gets Installed
425 skills across 62 categories covering:
- Sequence & Alignment (40): sequence-io, sequence-manipulation, alignment, alignment-files, database-access
- Read Processing (11): read-qc, read-alignment
- RNA-seq & Expression (14): differential-expression, rna-quantification, expression-matrix
- Single-Cell & Spatial (25): single-cell, spatial-transcriptomics
- Variant Analysis (21): variant-calling, copy-number, phasing-imputation
- Epigenomics (25): chip-seq, atac-seq, methylation-analysis, hi-c-analysis
- Metagenomics & Microbiome (13): metagenomics, microbiome
- Genomics & Assembly (29): genome-assembly, genome-annotation, genome-intervals, genome-engineering, primer-design
- Regulatory & Causal (13): gene-regulatory-networks, causal-genomics, rna-structure
- Temporal & Ecological (11): temporal-genomics, ecological-genomics
- Immunology & Clinical (25): immunoinformatics, clinical-databases, tcr-bcr-analysis, epidemiological-genomics
- Specialized Omics (36): proteomics, metabolomics, alternative-splicing, chemoinformatics, liquid-biopsy
- RNA Biology (20): small-rna-seq, epitranscriptomics, clip-seq, ribo-seq
- Phylogenetics & Evolution (16): phylogenetics, population-genetics, comparative-genomics
- Structural & Systems (11): structural-biology, systems-biology
- Screens & Cytometry (22): crispr-screens, flow-cytometry, imaging-mass-cytometry
- Pathway & Integration (14): pathway-analysis, multi-omics-integration, restriction-analysis
- Infrastructure (39): data-visualization, machine-learning, workflow-management, reporting, experimental-design, long-read-sequencing
- Workflows (40): end-to-end pipelines (FASTQ to results)
After Installation
Once installed, skills are automatically triggered based on the task at hand. Example requests:
- "I have RNA-seq counts from treated vs control samples - find the differentially expressed genes"
- "Call variants from this whole genome sequencing BAM file"
- "Cluster my single-cell RNA-seq data and find marker genes"
- "Predict the structure of this protein sequence"
- "Run a metagenomics classification on these shotgun reads"
Source
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같은 저장소의 스킬
Predicts ADMET properties using ADMETlab 3.0 (119 endpoints with uncertainty), ADMET-AI, DeepChem MolNet, and chemprop D-MPNN with explicit handling of OECD QSAR principles, applicability domain assessment, calibration, hERG/CYP/AMES gold-standard endpoints, and PAINS / Lipinski / Ro5 / Veber / BBB druglikeness filters. Use when filtering compounds for drug-likeness, prioritizing leads by predicted safety, or building an in-house ADMET QSAR model.
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peacezha/TRACE32026년 10월 18일 업데이트
Trim PCR primers from aligned reads in amplicon-panel BAMs using samtools ampliconclip. Use when processing SARS-CoV-2 ARTIC, hereditary cancer panels, ctDNA hot-spot panels, or any amplicon assay where primer-derived bases would falsely confirm reference at primer footprints.
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peacezha/TRACE32026년 10월 18일 업데이트
Filter alignments by flags, mapping quality, and regions using samtools view and pysam. Use when extracting specific reads, removing low-quality alignments, or subsetting to target regions.
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peacezha/TRACE32026년 10월 18일 업데이트
Create and use BAI/CSI indices for BAM/CRAM files using samtools and pysam. Use when enabling random access to alignment files or fetching specific genomic regions.
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peacezha/TRACE32026년 10월 18일 업데이트
Read, write, and convert multiple sequence alignment files using Biopython Bio.AlignIO. Supports Clustal, PHYLIP, Stockholm, FASTA, Nexus, and other alignment formats for phylogenetics and conservation analysis. Use when reading, writing, or converting alignment file formats.
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peacezha/TRACE32026년 10월 18일 업데이트