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Generate Mermaid diagrams (.mmd) and export to PNG/SVG/PDF using mmdc CLI or Kroki API. USE THIS SKILL when user mentions diagram, flowchart, sequence diagram, class diagram, ER diagram, state machine, architecture, visualize, git graph, 画图, 架构图, 流程图, 时序图, 类图, ER图, 甘特图, 状态机. PROACTIVELY USE when explaining ANY system with 3+ components, API flows, authentication sequences, class hierarchies, database schemas, or state machines. Supports 17+ diagram types with fully automatic layout.

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Authoritative reference and rules for developing for Obsidian — building TypeScript plugins (Plugin lifecycle, manifest.json, commands, settings, modals, views, ribbon/status bar), the Vault and Editor APIs, the event system, Markdown post-processing & code-block processors, CodeMirror 6 editor extensions, building CSS themes (CSS variables, theme.css/manifest), and submitting plugins/themes to the community directory. Use whenever the user asks to build, debug, or review an Obsidian plugin or theme, work with the Obsidian API (Vault/Editor/Workspace/Plugin), register commands/views/events, process Markdown, or release/submit to the Obsidian community.

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File notes into the right folder in the user's Obsidian vault and audit/reorganize its structure, via the `obsidian` CLI and the `00_Index/Folder_Map.md` map note. Use when a note needs filing, when the user asks where a note belongs, or wants to tidy, deduplicate, audit, or restructure folders. Requires the Obsidian app to be running.

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Use whenever the user wants to obtain, download, or fetch a paper's PDF — given a DOI, an arXiv id, a paper title, a citation, or a list of DOIs. Trigger on phrases like "download this paper", "find the PDF for [DOI]", "grab me the [Nature/bioRxiv/arXiv] paper on X", "get the open-access version", "I need this article", or any bulk/batch paper download request, even when the user doesn't explicitly say "PDF" or "DOI". Resolves via Unpaywall → Semantic Scholar → arXiv → PubMed Central → bioRxiv/medRxiv → publisher direct (institutional opt-in) → Sci-Hub mirrors as last-resort fallback.

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Use when user requests diagrams, flowcharts, sequence diagrams, class diagrams, component diagrams, ER diagrams, architecture charts, or visualizations — including generating a diagram from existing source code, or rendering/extracting PlantUML embedded in a Markdown file to images (e.g. preparing docs for Confluence/Notion). Also use proactively when explaining systems with 3+ components, APIs, data flows, or class hierarchies. Generates .puml files and exports to PNG/SVG via Kroki API (no local install required).

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Use when interpreting research findings, evaluating scientific evidence, analyzing mechanisms, comparing competing hypotheses, designing experiments, or constructing scientific arguments.

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Use when searching academic papers, looking up citations, finding authors, or getting paper recommendations using the Semantic Scholar API. Triggers on queries about research papers, academic search, citation analysis, or literature discovery.

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Prioritize drug targets from a ranked gene list (e.g., scRNA-seq DE output) by orchestrating parallel API queries against UniProt, OpenTargets (with integrated DepMap CRISPR essentiality + gnomAD constraint), PubMed, the Human Protein Atlas (HPA), and ChEMBL tool compounds, then re-ranking by a composite score combining protein localization, druggability, disease genetics, tissue specificity (safety), focus-cell-type expression, CRISPR essentiality, LoF safety constraint, and research maturity. Use whenever the user wants to filter, triage, prioritize, or "do due diligence" on a list of candidate genes for drug discovery, especially after a DE / DEG analysis when they say things like "which of these should I follow up on", "filter for druggable targets", "make a target dossier", "rank these for tractability", "annotate these genes for druggability", or "build a target report". Trigger even when the user says just "filter these candidate genes" or hands over a CSV from a DE pipeline.

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Multi-platform Chinese & multilingual TTS text-to-speech via Edge/Doubao/CosyVoice/Qwen3/StepFun/GLM-TTS/Azure/Tencent/Baidu/MiniMax/Xunfei plus ElevenLabs/OpenAI/Google/Atlas Cloud — 15 backends, word-level timestamps, [PAUSE:x] pause markers, pinyin pronunciation overrides

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Use when the user wants to repurpose a YouTube video for Bilibili, add bilingual (English-Chinese) subtitles to a video, or create hardcoded subtitle versions for Chinese platforms.

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Developing with Zotero: Web API v3 (read/write, file upload, sync, OAuth, item types/fields), the desktop client's JS API, plugin development (7-10), translators (web/import/export/search), and CSL/citeproc-js styles. Use when scripting Zotero or building or debugging a plugin, translator, or citation style.

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Use when the user asks for a literature review, academic deep dive, research report, state-of-the-art survey, topic scoping, comparative analysis of methods/papers, grant background, or any request that needs multi-source scholarly evidence with citations. Also trigger proactively when a user question clearly requires academic grounding (e.g. "what's known about X", "compare approach A vs B in the literature", "summarize the field of Y"). Runs an 8-phase (Phase 0..7), script-driven research workflow across 7 federated sources (OpenAlex, arXiv, Crossref, PubMed, DBLP, bioRxiv, Exa) with optional Semantic Scholar / Brave MCP enrichment, with deduplication, transparent ranking, dual-backend citation chasing (OpenAlex + Semantic Scholar), self-critique, and structured report output with verifiable citations.

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Use when designing, reviewing, or refactoring a CLI that must serve AI agents alongside humans, or when converting an API or SDK into an agent-usable CLI interface.

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Query the Semantic Scholar academic corpus through AI2's Asta MCP server: keyword or title search with venue and date filters, who-cited-a-paper traversal, author profiles and publications, DOI/arXiv/PMID lookup, and ~500-word full-text snippets for evidence, with citation counts and h-index. Use when the user asks for papers on a topic, who cited a paper, an author's work, recent literature since a date, or a venue-scoped paper list. Requires the Asta MCP server.

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Use whenever the user wants to interact with Figshare - searching public datasets/articles, downloading Figshare files, listing their own articles/collections/projects, creating or updating articles, or uploading files (including large multi-part uploads) via the Figshare v2 REST API. Trigger on mentions of "figshare", figshare DOIs (10.6084/m9.figshare.*), figshare.com URLs, or phrases like "upload my dataset to figshare", "publish to figshare", "get figshare article".

日本語の概要は準備中です。原文の説明を表示しています。