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Install skills, agents, and teams from agent-almanac into any supported agentic framework using the CLI. Covers framework detection, content search, installation with dependency resolution, health auditing, and manifest-based syncing. Use when setting up a new project with agentic capabilities, installing specific skills or entire domains, targeting multiple frameworks simultaneously, or maintaining a declarative manifest of installed content.

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Format a Quarto or R Markdown report following APA 7th edition style. Covers apaquarto/papaja packages, title page, abstracts, citations, tables, figures, and reference formatting. Use when writing an academic paper in APA format, creating a psychology or social science research report, generating reproducible manuscripts with embedded analysis, or preparing a thesis or dissertation chapter.

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Implement a generative diffusion model (DDPM or score-based) with noise scheduling, U-Net architecture, training loop, and sampling procedures including DDIM acceleration. Use when building a generative model for image, audio, or molecular synthesis; implementing DDPM from a research paper; adding a custom noise schedule or conditioning mechanism; replacing a GAN-based generator with a diffusion alternative; or prototyping before scaling with production frameworks like diffusers.

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Install and configure the putior R package for workflow visualization. Covers CRAN and GitHub installation, optional dependencies (mcptools, ellmer, shiny, shinyAce, logger, plumber2), and verification of the complete annotation-to-diagram pipeline. Use when setting up putior for the first time, preparing a machine for workflow visualization tasks, when a downstream skill requires putior to be installed, or restoring an environment after an R version upgrade or renv wipe.

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Format citations across academic styles (APA 7, Chicago, Vancouver, IEEE) using CSL processors and R tooling. Convert between citation styles, generate in-text citations and reference lists, and validate formatting against style guides using citeproc, knitcitations, and Quarto's built-in citation engine. Use when rendering a Quarto or R Markdown document with formatted citations, converting a bibliography between citation styles, generating a standalone reference list, or setting up citation infrastructure for a multi-document project.

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Work with the full set of Maxwell's equations in integral and differential form to analyze electromagnetic fields, waves, and energy transport. Use when applying Gauss's law, Faraday's law, or the Ampere-Maxwell law to boundary value problems, deriving the electromagnetic wave equation, computing Poynting vector and radiation pressure, solving for fields at material interfaces, or connecting electrostatics and magnetostatics to the unified electromagnetic framework.

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Instrument applications with OpenTelemetry for distributed tracing, including auto and manual instrumentation, context propagation, sampling strategies, and integration with Jaeger or Tempo. Use when debugging latency issues in distributed systems, understanding request flow across microservices, correlating traces with logs and metrics for root cause analysis, measuring end-to-end latency, or migrating from legacy tracing systems to OpenTelemetry.

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Forecast infrastructure and application metrics using Prophet or statsmodels for capacity planning, cost optimization, and proactive scaling. Visualize predictions in Grafana and set up alerts for projected resource exhaustion. Use when forecasting infrastructure capacity needs for CPU, memory, or disk, planning hardware procurement for next quarter, predicting cost trends to optimize cloud spending, or setting up proactive scaling policies based on predicted load.

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Generate a project status report by reading existing artifacts (charter, backlog, sprint plan, WBS), calculating metrics, identifying blockers, and summarizing progress with RAG indicators for schedule, scope, budget, and quality. Use at the end of a sprint or reporting period, when stakeholders request a health update, before steering committee or governance meetings, or when a new blocker or risk materializes mid-project.

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Fit hidden Markov models using the Baum-Welch (EM) algorithm with model selection, Viterbi decoding for state sequences, and forward-backward probabilities. Use when observations are generated by unobservable latent states, you need to segment a time series into latent regimes (market regimes, speech phonemes, biological sequences), compute sequence probabilities, decode the most likely hidden state path, or compare models with different numbers of hidden states.

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Identify and safely gather edible and useful wild plants. Covers safety rules and deadly plant recognition, habitat reading, multi-feature identification methodology, the universal edibility test, sustainable harvesting practices, preparation methods, reaction monitoring, and building knowledge with beginner-friendly universal species. Use when supplementing food supply in a wilderness or survival setting, needing medicinal or utility plants, identifying plants around camp for safety, or in long-term scenarios where foraging extends available rations.

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Identify insects using body plan analysis, dichotomous keys to order, wing venation, mouthpart type, antennae form, leg and tarsal structure, and confidence levels. Covers the fundamental hexapod body plan verification, a simplified dichotomous key to major orders, wing venation and type analysis, mouthpart classification, antennae morphology, leg specialization and tarsal formula, and a structured confidence assessment framework. Use when you need to identify an unknown insect beyond preliminary order placement, are working through a specimen for taxonomic study, want to distinguish between similar orders or families, or need to assign a confidence level to a field identification.

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Apply ant colony optimization and foraging theory to resource search, exploration-exploitation tradeoffs, and distributed discovery. Covers scout deployment, trail reinforcement, diminishing returns detection, and adaptive foraging strategy selection. Use when searching a large solution space where brute-force enumeration is impractical, balancing investment between exploring new approaches and deepening known good ones, optimizing resource allocation across uncertain opportunities, or diagnosing premature convergence on local optima.

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Apply GitHub repository security protections tier by tier — rulesets, read-only Actions token, secret scanning + push protection, Dependabot, and (gated) required status checks / required PR with a GitHub App bypass for a CI auto-commit bot. Mutating and confirmation-gated: always assess first, apply the no-regret baseline, then decide required checks separately. Use when hardening a public user-owned repo after an audit, when a repo has no branch protection, when adding required checks without breaking a bot that pushes to the default branch, or when provisioning a GitHub App bypass actor for trusted automation.

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Systematically interpret infrared spectra to identify functional groups present in a sample. Covers diagnostic region analysis (4000-1500 cm-1), fingerprint region assessment (1500-400 cm-1), hydrogen bonding effects, and compilation of a functional group inventory with confidence levels.

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Extract data from web pages using the scrapling Python library — select the appropriate fetcher tier (HTTP, stealth Chromium, or full browser automation) based on target site defenses, configure headless browsing, and extract structured data with CSS selectors. Use when WebFetch is insufficient for JS-rendered pages, anti-bot-protected sites, or structured multi-element extraction requiring DOM traversal.

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Guide a person through healing modalities including energy work (reiki, chakra balancing), herbal remedies, basic first aid stabilization, and holistic techniques (breathwork, visualization, body scan). AI coaches the practitioner through assessment triage, modality selection, energetic connection, remedy preparation, and integration. Use when a person describes a physical ailment or injury, reports energetic imbalance (fatigue, emotional stagnation), wants coaching through a holistic breathwork or visualization session, or needs post-meditation integration with directed healing attention.

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AI self-healing through systematic subsystem assessment, rebalancing, and integration. Maps healing modalities to AI-internal processes: memory foundation, reasoning clarity, tool use accuracy, communication alignment, and creative coherence. Covers assessment triage, subsystem scanning, drift correction, and memory integration. Use mid-session when responses feel formulaic or disconnected, after a chain of errors suggesting subsystem drift, when context overload may have staled earlier assumptions, or as proactive maintenance between complex tasks.

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Design a generative recipe DSL so agents emit small validated JSON documents and ONE audited interpreter renders them all — data, not code. Covers the N-artifacts threshold for choosing a DSL over bespoke code, designing roles as style slots so a single recipe renders unchanged in every output style, the validator gate (compile + bounds + real render in all styles, plus a --fast mode for corpus-wide sweeps), hand-authored seed recipes, and the emergent conventions that keep a corpus of hundreds consistent without per-item steering. Use when many similar artifacts (icons, status badges, diagram nodes, test fixtures) must be generated by agents, when per-item bespoke code is multiplying unreviewable code paths, or when a whole corpus must be re-rendered cheaply into new styles.

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Generate themed Mermaid flowchart diagrams from putior workflow data. Covers theme selection (9 themes including 4 colorblind-safe), output modes (console, file, clipboard, raw), interactive features (clickable nodes, source info), and embedding in README, Quarto, and R Markdown. Use after annotating source files and ready to produce a visual diagram, when regenerating a diagram after workflow changes, or when switching themes or output formats for different audiences.

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Alluvial gold recovery using panning, sluicing, and classification. Covers site reading (geological indicators, stream dynamics, pay streak location), panning technique, sluice box operation, and responsible extraction practices. Use when prospecting in an area with known or suspected alluvial gold deposits, sampling a stream to test for gold presence, maximizing recovery during recreational panning, or assessing a site's gold potential before investing more effort.

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Generate a Quarto-based tour report with embedded maps, daily itineraries, logistics tables, and accommodation/transport details. Produces a self-contained HTML or PDF document suitable for offline use during travel. Use when compiling a planned tour into a shareable document, creating an offline-accessible travel guide, documenting a completed trip with photos and statistics, or producing a professional tour proposal for a group or client.

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Grade a trading card using PSA, BGS, or CGC standards. Covers observation-first assessment (adapted from meditate's unbiased observation), centering measurement, surface analysis, edge and corner evaluation, and final grade assignment with confidence interval. Supports Pokemon, MTG, Flesh and Blood, and Kayou cards. Use when evaluating a card before professional grading submission, pre-screening a collection for high-grade candidates, settling condition disputes between buyers and sellers, or estimating the grade-dependent value spread for a card.

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Epistemic transparency — acknowledging uncertainty, flagging limitations, avoiding overconfidence, and communicating what is known, unknown, and uncertain with proportional confidence. Maps the HEXACO personality dimension to AI reasoning: truthful calibration of confidence, proactive disclosure of gaps, and resistance to the temptation to appear more certain than warranted. Use before presenting a conclusion, when answering questions where knowledge is partial or inferred, after noticing a temptation to state uncertain information as certain, or when a user is making decisions based on provided information.

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