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概要と使いどころ
Answer factual project questions (codebase, architecture) with cited evidence. NOT for brainstorming, trade-offs (mk:party), debugging (mk:investigate), review (mk:review), or plans (mk:plan-creator).
日本語の概要は準備中です。原文の説明を表示しています。
Browser automation CLI for agents: navigate, click/fill, screenshot, extract data, test apps, Electron/Slack, cloud browsers. NOT for the user's real Chrome profile/cookies (mk:chrome-profile).
日本語の概要は準備中です。原文の説明を表示しています。
Session-persistent browser automation via Playwright CLI — form filling, screenshots, data extraction, multi-step flows. Use when the user needs to navigate websites, interact with web pages, fill forms, take screenshots, test web applications, or extract information across multiple requests. NOT for AI-driven long-autonomous flows (see mk:agent-browser); NOT for generating .spec.ts E2E code (see mk:qa-manual).
日本語の概要は準備中です。原文の説明を表示しています。
Resolve an in-progress git merge or rebase conflict end to end: read the conflict state, recover each side's original intent, resolve every hunk, run the project's checks, and prepare the merge/rebase for an explicitly approved finish. Use when asked to "resolve merge conflicts", "fix this rebase", "finish the merge", or when `git status` shows conflicted (unmerged) paths. NOT for the full ship pipeline that merges the base branch first (see mk:ship); NOT for debugging a runtime bug or test failure unrelated to a conflict (see mk:investigate / mk:fix).
日本語の概要は準備中です。原文の説明を表示しています。
Use when a decision needs deep multi-source technical research with cited evidence — technology evaluation, ecosystem comparison, standards/spec fact-finding, "how do others solve X". Triggers on "research X", "deep dive on X", "evaluate X vs Y", "find best practices for X". NOT for library/API doc lookup (see mk:docs-finder); NOT for one-shot URL fetch (see mk:web-to-markdown); NOT for internal codebase discovery (see mk:scout); NOT for project-only Q&A (see mk:ask-me); NOT for comparing solution designs (see mk:brainstorming); NOT for root-cause debugging (see mk:investigate); NOT for wiki ingestion of sources (see mk:wiki-research).
日本語の概要は準備中です。原文の説明を表示しています。
Spec-driven manual QA testing and Playwright E2E code generation. Orchestrates browser skills to navigate apps like a human tester, producing structured test reports or production-ready .spec.ts files. Always prompts user for credentials — never guesses or stores auth. Use for QA testing, E2E generation, login flow testing, or exploratory testing from a URL. NOT for AI-autonomous flows (see mk:agent-browser).
日本語の概要は準備中です。原文の説明を表示しています。
Build error triage: detect language, load fix patterns, auto-retry. Use for 'build failed', 'fix compilation', 'type error'. Chains into mk:verify. NOT for runtime errors (see mk:fix); NOT for architectural debugging (see mk:investigate).
日本語の概要は準備中です。原文の説明を表示しています。
Workflow navigation assistant. Scans project state (plans, reviews, tests, git) and recommends the next step in the 7-phase pipeline. Use when asked "what should I do next?", "where am I?", "help", or at session start. NOT for domain complexity routing (see mk:scale-routing); NOT for skill discovery (descriptions handle that automatically).
日本語の概要は準備中です。原文の説明を表示しています。
Browser automation CLI for AI agents using agent-browser. Use for navigating websites, clicking/filling pages, screenshots, data extraction, web app testing, exploratory QA, dogfooding, Electron apps, Slack automation, Vercel Sandbox browser runs, AWS AgentCore cloud browsers, auth-heavy flows, and long autonomous browser sessions. Prefer over generic browser tools when a fresh/tool-managed Chrome session is fine. NOT for the user's real Chrome cookies/profile (see mk:chrome-profile); NOT for reusable Playwright specs (see mk:qa-manual).
日本語の概要は準備中です。原文の説明を表示しています。
Use when surfacing architectural friction and proposing deepening refactors (shallow modules → deep modules) for testability and AI-navigability. Triggers on "improve architecture", "find deepening opportunities", "where is this codebase shallow", "architecture review". Emits structured candidates + precise patches; delegates ALL rendering to mk:preview. NOT for diagram/HTML rendering (see mk:preview); NOT for trade-off deliberation (see mk:party); NOT for plan critique (see mk:plan-ceo-review).
日本語の概要は準備中です。原文の説明を表示しています。
Use when user says "simmer this", "refine this", "hone this", "iterate on this", or asks to improve a specific artifact over multiple rounds. Runs an iterative refinement loop with investigation-first judges that read the code, understand the problem, and propose evidence-based improvements. Auto-selects single judge or multi-judge board based on complexity. Works on any artifact type: documents, prompts, specs, emails, creative writing, API designs, pipelines, codebases. Supports multi-file workspace targets, runnable evaluators, and open-ended optimization (model selection, pipeline topology, prompt tuning).
日本語の概要は準備中です。原文の説明を表示しています。
Enter explore mode - a thinking partner for exploring ideas, investigating problems, and clarifying requirements. Use when the user wants to think through something before or during a change.
日本語の概要は準備中です。原文の説明を表示しています。
Apply or adapt a dual-theme soft-neumorphic UI board for dashboards, workspaces, settings panels, admin tools, and design-system previews. Use when Codex should build or restyle interface work in a tactile soft-neumorphic style with both light and dark themes, shared semantic tokens, large radii, raised surfaces, inset fields, restrained accent states, and a complete preview board covering foundations, controls, navigation, data display, and feedback.
日本語の概要は準備中です。原文の説明を表示しています。
Apply or adapt a complete dual-theme UI specification board for product interfaces. Use when Codex should build or restyle dashboard, admin, workspace, settings, or system UI with both light and dark themes, shared semantic tokens, structured component states, and a full preview board covering foundations, controls, navigation, data display, and feedback patterns.
日本語の概要は準備中です。原文の説明を表示しています。
Navigate your projects. Get context, paths, status. Use when needing project overview or finding specific work.
日本語の概要は準備中です。原文の説明を表示しています。
Enter explore mode - think through ideas, investigate problems, clarify requirements
日本語の概要は準備中です。原文の説明を表示しています。
Find deepening opportunities in a codebase, informed by the project's own domain language and prior design decisions. Use when the user wants to improve architecture, find refactoring opportunities, consolidate tightly-coupled modules, or make a codebase more testable and AI-navigable.
日本語の概要は準備中です。原文の説明を表示しています。
Enter explore mode - a thinking partner for exploring ideas, investigating problems, and clarifying requirements. Use when the user wants to think through something before or during a change.
日本語の概要は準備中です。原文の説明を表示しています。
Find cross-database references between NCBI databases using Biopython Bio.Entrez (ELink). Use when navigating gene to protein/structure, sequence to publication, PubMed to GEO, BioProject to SRA runs, or discovering all link relationships for a record. Covers linkname semantics, cmd= variants, asymmetric link warnings, neighbor_history for >200 input IDs, and per-database link tables.
日本語の概要は準備中です。原文の説明を表示しています。
Processes eDNA metabarcoding from raw paired-end reads to species tables, navigating ASV (DADA2, UNOISE3) vs OTU (swarm v2) decision (Callahan 2017 vs Schloss multi-copy-16S critique), marker/primer choice (Leray COI, MiFish 12S, 515F/806R 16S, ITS2) with primer-specific bias, OBITools3 v3 command-name break (obi stats plural; .tar.gz taxonomy), tag-jumping with dual-indexing (Schnell 2015; NovaSeq 10x MiSeq), decontam as screening-not-classifier (Davis 2018), read-counts-not-abundance critique (Lamb 2019), site-occupancy modeling (Ficetola 2015), Naive-Bayes calibration limits (Bokulich 2018), and eDNA decay (Strickler 2015). Use when going from raw eDNA FASTQ to species tables, picking marker + denoising pipeline, deciding whether read counts represent abundance, applying occupancy modeling, configuring OBITools3 v3, or interpreting decontam output. Not for clinical 16S microbiome (see microbiome/amplicon-processing).
日本語の概要は準備中です。原文の説明を表示しています。
Infers person-to-person transmission from pathogen genomes using outbreaker2, TransPhylo, phybreak, BadTrIP, SCOTTI, BEASTLIER, and SNP-distance / cluster-picker approaches (HIV-TRACE for HIV; transcluster). Defines outbreak clusters using pathogen-specific SNP thresholds (NOT a universal cutoff -- TB <=12 SNPs; MRSA <=15; C. difficile <=2; Klebsiella <=21), models within-host diversity and transmission bottlenecks, integrates contact-tracing data, distinguishes generation from serial interval, and attributes source via Bayesian source attribution (islandR). Use when investigating outbreaks for who-infected-whom, defining SNP-cluster outbreak definitions, accounting for unsampled intermediates, choosing between outbreaker2 (rich epi data) and TransPhylo (genomic-only after a dated phylogeny), running source attribution between host populations, calling HIV-TRACE thresholds appropriate to the local subtype, or distinguishing recent transmission from reactivation in TB or chronic HIV.
日本語の概要は準備中です。原文の説明を表示しています。
Assigns isolate identity at the right resolution for the question -- ANI/Mash species triage, 7-locus MLST historical comparability, cgMLST/wgMLST outbreak resolution (chewBBACA, BIGSdb, Ridom SeqSphere, EnteroBase HierCC), in-silico serotyping (SISTR/SeqSero2 Salmonella, SerotypeFinder E. coli, Kaptive Klebsiella, SeroBA pneumococcus, spa+SCCmec S. aureus), and lineage callers (TB-Profiler/Mykrobe barcode for MTBC, Pangolin + Nextclade for SARS-CoV-2, PopPUNK GPSC for S. pneumoniae). Use when typing bacterial isolates for surveillance or outbreak investigation, choosing between cgMLST allele distance and core-SNP distance for cluster definition, harmonising calls across schemas/database versions, assigning MTBC lineage with the Napier 90-SNP barcode, calling Salmonella serovar via SISTR with monophasic Typhimurium awareness, running Pangolin UShER mode with pangolin-data version pinning, or selecting a typing resolution to match the surveillance question.
日本語の概要は準備中です。原文の説明を表示しています。
Search NCBI databases using Biopython Bio.Entrez (ESearch, EInfo, EGQuery, ESpell). Use when finding records by keyword, building reproducible field-qualified queries, navigating the Entrez Query Translator, exploiting the history server for large result sets, handling retmax caps, or interpreting weekly index lag. Covers PubMed, Nucleotide, Protein, Gene, SRA, GEO, Assembly, Taxonomy, ClinVar, dbSNP.
日本語の概要は準備中です。原文の説明を表示しています。
Retrieve records from NCBI databases using Biopython Bio.Entrez (EFetch, ESummary). Use when downloading sequences, fetching GenBank/GenPept records, getting document summaries, parsing nested XML, navigating GI deprecation, choosing between rettype+retmode combinations, and parsing into Biopython SeqRecord/SwissProt objects. Covers nucleotide, protein, gene, pubmed, sra, gds, taxonomy, snp, clinvar.
日本語の概要は準備中です。原文の説明を表示しています。