Execute ENCODE ATAC-seq processing pipeline from FASTQ to peaks and signal tracks. Child of pipeline-guide. Provides stage-by-stage Nextflow execution with Docker containers and cloud deployment. Handles Tn5 transposase offset correction, mitochondrial read removal, and nucleosome-free fragment selection. Use when users need to process ATAC-seq data following ENCODE standards. Trigger on: ATAC-seq pipeline, run ATAC-seq, process ATAC-seq, chromatin accessibility, open chromatin, Tn5 shift, TSS enrichment.
日本語の概要は準備中です。原文の説明を表示しています。
ammawla/encode-toolkit☆ 212026年9月27日 更新
Execute ENCODE ChIP-seq processing pipeline from FASTQ to peaks and signal tracks. Child of pipeline-guide. Provides stage-by-stage Nextflow execution with Docker containers and cloud deployment. Use when users need to process ChIP-seq data following ENCODE standards, run peak calling with MACS2, perform IDR analysis, or generate signal tracks. Trigger on: ChIP-seq pipeline, run ChIP-seq, process ChIP-seq, MACS2 peak calling, IDR analysis, ChIP-seq FASTQ processing.
日本語の概要は準備中です。原文の説明を表示しています。
ammawla/encode-toolkit☆ 212026年9月27日 更新
Execute ENCODE DNase-seq pipeline from FASTQ to hotspots and footprints. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing DNase-seq data, calling DNase hypersensitive sites, performing footprinting analysis. Trigger on: DNase-seq pipeline, DNase hypersensitive, DHS, Hotspot2, footprinting, DNase I, chromatin accessibility DNase.
日本語の概要は準備中です。原文の説明を表示しています。
ammawla/encode-toolkit☆ 212026年9月27日 更新
Access ENCODE uniform analysis pipelines, generate user-specific Nextflow/WDL pipelines, manage compute resources, and integrate with cloud platforms. Use when the user wants to understand ENCODE pipelines, run pipelines on their own data, generate custom Nextflow workflows from ENCODE pipeline code, check compute requirements (CPU/GPU/memory), run pipelines in background, or integrate with Google Cloud, AWS, or other cloud platforms. Also use when the user asks about ENCODE pipeline outputs, processing standards, software versions, or wants to replicate ENCODE processing. Covers local execution, HPC, and cloud deployment with resource-aware scheduling. Use this skill for ANY pipeline execution, workflow generation, or compute resource management task involving ENCODE data.
日本語の概要は準備中です。原文の説明を表示しています。
ammawla/encode-toolkit☆ 212026年9月27日 更新
Execute ENCODE Hi-C pipeline from FASTQ to contact matrices and loop calls. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing Hi-C data, generating contact matrices, or calling loops. Trigger on: Hi-C pipeline, chromatin conformation, contact matrix, loop calling, TAD detection, Juicer, HiCCUPS, 3D genome.
日本語の概要は準備中です。原文の説明を表示しています。
ammawla/encode-toolkit☆ 212026年9月27日 更新
Execute ENCODE RNA-seq pipeline from FASTQ to gene quantification and signal tracks. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing RNA-seq data with STAR alignment, RSEM/Kallisto quantification, or generating expression matrices. Trigger on: RNA-seq pipeline, gene expression, STAR alignment, RSEM quantification, transcript quantification, TPM, FPKM, RNA processing, run RNA-seq.
日本語の概要は準備中です。原文の説明を表示しています。
ammawla/encode-toolkit☆ 212026年9月27日 更新
Execute ENCODE Whole Genome Bisulfite Sequencing (WGBS) pipeline from FASTQ to methylation calls. Child of pipeline-guide. Provides Nextflow execution with Docker and cloud deployment. Use when processing WGBS/bisulfite-seq data, calling methylation levels, generating bedMethyl files. Trigger on: WGBS pipeline, bisulfite sequencing, methylation calling, DNA methylation pipeline, bismark, bwa-meth, bedMethyl.
日本語の概要は準備中です。原文の説明を表示しています。
ammawla/encode-toolkit☆ 212026年9月27日 更新
Use when designing, validating, deploying, changing, or troubleshooting Volcengine TLS LogCollector collection on Linux hosts or Kubernetes, including Project, Topic, host group, collector rule, index, binding, heartbeat, parsing, and end-to-end log ingestion checks through volclog. 当用户需要设计、部署、 变更或排查火山引擎日志服务 LogCollector 采集(主机、Kubernetes DaemonSet/Controller、机器组、采集配置、 心跳、解析、日志未入库)时调用。
日本語の概要は準備中です。原文の説明を表示しています。
volcengine/volcengine-skills☆ 212026年10月12日 更新
Use when the user asks to analyze, consult, setup, manage, configure, or design a Volcengine Landing Zone, including organization, accounts, finance, identity, cloudtrail, or network infrastructure, or to deploy a solution/blueprint.
日本語の概要は準備中です。原文の説明を表示しています。
volcengine/volcengine-skills☆ 212026年10月12日 更新
Manage Volcengine's AI-native BaaS platform (Supabase edition / AIDAP / 火山引擎 AI 原生 BaaS 平台 Supabase 版) — a Volcengine-operated distribution that differs from official Supabase. Use when the user asks to create, inspect, or manage Volcengine Supabase or AIDAP resources — workspaces, branches, computes, SQL queries, schema changes, Auth, Realtime, Edge Functions, Storage buckets, frontend static-site hosting (Pages), API keys, connection info, or TypeScript type generation — or when a Volcengine deployment selects AIDAP as its database provider. Also trigger on Chinese prompts mentioning "火山引擎 Supabase" or "火山 Supabase". Operations run through the byted-supabase-cli command-line tool (installed via `npm i -g @byted-supabase/cli`; this is NOT the official `supabase` CLI). Do NOT use it for general database discussions, non-Supabase services (RDS MySQL, Redis), or pure client-side coding unrelated to Supabase backend management.
日本語の概要は準備中です。原文の説明を表示しています。
volcengine/volcengine-skills☆ 212026年10月12日 更新
Guideline for designing, implementing, and verifying secure Python applications following OWASP Top 10 best practices. Use when the user wants to: (1) review Python code for security vulnerabilities, (2) design a secure Python application architecture, (3) implement security features (authentication, authorization, cryptography, input validation), (4) audit Python dependencies for known vulnerabilities, (5) create security checklists or verification plans, (6) fix security bugs or harden existing Python code, (7) set up security testing and static analysis (bandit, safety, semgrep), or (8) handle any Python security concern including injection prevention, secure deserialization, SSRF protection, secrets management, and secure deployment.
日本語の概要は準備中です。原文の説明を表示しています。
jim60105/copilot-prompt☆ 212026年10月9日 更新
Guideline for designing, implementing, and verifying secure TypeScript and JavaScript applications following OWASP Top 10 best practices. Use when the user wants to: (1) review TypeScript or JavaScript code for security vulnerabilities, (2) design a secure Node.js, Deno, or browser application architecture, (3) implement security features (authentication, authorization, cryptography, input validation), (4) audit npm/yarn/pnpm dependencies for known vulnerabilities, (5) create security checklists or verification plans, (6) fix security bugs or harden existing TypeScript or JavaScript code, (7) set up security testing and static analysis (ESLint security plugins, Semgrep, Snyk), or (8) handle any TypeScript/JavaScript security concern including injection prevention, prototype pollution, XSS protection, SSRF prevention, secrets management, and secure deployment.
日本語の概要は準備中です。原文の説明を表示しています。
jim60105/copilot-prompt☆ 212026年10月9日 更新
Bootstraps Flux CD on Kubernetes clusters, creates and manages GitOps sources (Git/Helm/OCI/Bucket), configures kustomizations and Helm releases, reconciles resources, sets up image automation and alerting, and pushes OCI artifacts. Use this skill whenever the user mentions the flux CLI, flux bootstrap, flux create source, flux create kustomization, flux create helmrelease, flux reconcile, flux get, Flux CD, GitOps with Flux, or asks about managing Kubernetes deployments via GitOps. Also trigger when users ask about creating Git/Helm/OCI/Bucket sources, building or diffing kustomizations, pushing OCI artifacts, setting up image automation, creating Flux alerts/receivers, or bootstrapping Flux on GitHub/GitLab/Gitea/Bitbucket. Even if the user just says "flux" in a Kubernetes context, this skill applies.
日本語の概要は準備中です。原文の説明を表示しています。
dirien/yet-another-agent-harness☆ 202026年5月31日 更新
Best practices for writing reliable Pulumi programs. Covers Output handling, resource dependencies, component structure, secrets management, safe refactoring with aliases, and deployment workflows.
日本語の概要は準備中です。原文の説明を表示しています。
dirien/yet-another-agent-harness☆ 202026年5月31日 更新
Read, create, edit, and deploy web apps and projects in Lovable. Use to turn a product brief into a working website or prototype, inspect existing project code, update pages and features, and publish changes through Lovable's official MCP server.
日本語の概要は準備中です。原文の説明を表示しています。
obra/muse-skills☆ 202026年10月14日 更新
Generate production-grade Kubernetes manifests — Deployments with probes and security contexts, Services, Ingress with TLS, HPA, PDB, NetworkPolicy, ConfigMaps, Secrets — with optional Helm charts, Kustomize overlays, Istio mesh, and ArgoCD GitOps
日本語の概要は準備中です。原文の説明を表示しています。
tinh2/skills-hub-registry☆ 202026年9月5日 更新
Configure a CDN with optimized caching, SSL/TLS, security headers, and cache invalidation — auto-detects hosting provider and app type, generates CloudFront, Cloudflare, or Vercel config with per-content-type cache rules, edge functions, and compression. Use when deploying a static site, SPA, SSR app, or adding a CDN layer to an existing API.
日本語の概要は準備中です。原文の説明を表示しています。
tinh2/skills-hub-registry☆ 202026年9月5日 更新
Run a full pre-launch quality gate before shipping — chains product review, growth audit, UX audit, security scan, and deployment preflight into a go/no-go launch decision. Stops on critical blockers. Use before v1 launch, beta release, major version rollout, or feature launch.
日本語の概要は準備中です。原文の説明を表示しています。
tinh2/skills-hub-registry☆ 202026年9月5日 更新
Generates production-ready Terraform files for AWS infrastructure. Writes complete .tf files for any cloud architecture — no deployment, just file generation.
日本語の概要は準備中です。原文の説明を表示しています。
tinh2/skills-hub-registry☆ 202026年9月5日 更新
Audit an emergency resource management system for crisis readiness. Evaluates inventory tracking accuracy, deployment request-to-arrival pipeline, logistics and route optimization, supply chain resilience, inter-agency resource sharing (NIMS/EDXL), staging area management.
日本語の概要は準備中です。原文の説明を表示しています。
tinh2/skills-hub-registry☆ 202026年9月5日 更新
Generate ship-ready release notes from specs and tickets. Use this skill when: - A release is being prepared and you need user-facing release notes - You need internal (engineering) release notes for a deployment - You want to generate release notes from completed specs or tickets
日本語の概要は準備中です。原文の説明を表示しています。
qa-aman/claude-skills☆ 202026年10月13日 更新
SEO drift monitoring: capture baselines of SEO-critical elements, detect changes, and track regressions over time. Git for SEO: baseline, diff, and track changes to your on-page SEO. Use when user says "SEO drift", "baseline", "track changes", "did anything break", "SEO regression", "compare SEO", "before and after", "monitor SEO changes", or "deployment check".
日本語の概要は準備中です。原文の説明を表示しています。
gabrielmoreira/agent-skills-mirror☆ 192026年10月14日 更新
Manage persistent coding sessions across Claude Code, Codex, Antigravity (agy), Grok Build, and OpenCode engines. Use when orchestrating multi-engine coding agents, starting/sending/stopping sessions, running multi-agent council collaborations, cross-session messaging, ultraplan deep planning, ultrareview parallel code review, autoloop autonomous workspace iteration, ultraapp building deployable web apps from a structured Q&A interview, switching models/tools at runtime, exposing the orchestrator's 78 tools as an MCP server to Hermes Agent / Claude Desktop / Cursor / Cline / Continue / Zed / Windsurf / Goose, or running as an Agent Client Protocol (ACP) agent that Zed / JetBrains / Neovim / Emacs / VS Code / dsh can drive directly. Triggers on "start a session", "send to session", "run council", "ultraplan", "ultrareview", "autoloop", "ultraapp", "Forge tab", "build a web app", "one-click app", "AppSpec", "autonomous iteration", "iterate until goal", "auto research", "switch model", "hand off a session", "session handoff", "switch engine", "continue on codex", "continue on claude", "move this session to another engine", "multi-agent coding", "coding session", "session inbox", "grok session", "grok build", "opencode", "mcp server", "clawo-mcp", "hermes mcp", "model context protocol", "ultracode", "dynamic workflow", "fanout", "fan-out", "best-of-N", "steer turn", "interrupt turn", "fork thread", "rollback turns", "acp", "agent client protocol", "clawo acp", "zed agent", "jetbrains agent", "external agent", "dsh subagent", "deepseek harness", "clawo runs", "run ledger", "session cost", "coding-agent token usage", "spend cap", "budget limit", "maxBudgetUsd", "durable workflow", "resume a run", "verify a coding run", "acceptance contract", "evidence bundle", "did the agent's tests actually pass", "protected tests", "agent edited the tests", "human gate", "repair loop", "clawo workflow", "clawo verify", "clawo solve", "clawo fanout", "fix and verify", "solve from the terminal".
日本語の概要は準備中です。原文の説明を表示しています。
gabrielmoreira/agent-skills-mirror☆ 192026年10月14日 更新
Use this skill when designing, generating an MVP blueprint for, auditing, troubleshooting, refactoring, or explaining an agentic harness for any domain. Covers provider-neutral agent architecture for OpenAI, Anthropic, and OpenAI-compatible APIs: agent loops, tool design, record provenance, interactive presentation, user-memory lifecycles, environment-adaptive tools, speculative tool execution, late-bound capabilities, permissions, system prompts, planning, goals, always-on agents and durable runtime, adaptive agent teams, context compaction, memory, skills, MCP/external connectors, public-board communications, realtime voice agents, hardware agents and board deployment, self-refining recursive harnesses, programmable context, continual refinement, observability, evals, prompt caching, agent-legible environments, feedback loops, and safety.
日本語の概要は準備中です。原文の説明を表示しています。
gabrielmoreira/agent-skills-mirror☆ 192026年10月14日 更新