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Design and run reproducible benchmarks. Use when measuring performance scaling, comparing branches, or analyzing speedup metrics.

日本語の概要は準備中です。原文の説明を表示しています。

GitHub repository management — triage PRs/issues, check Actions status, manage branch protection, tag releases, housekeeping (stale branches, stashes), CODEOWNERS, badges, and repo hardening. Use when the user asks about GitHub, PRs, CI/CD status, repo health, branch protection, releases, or any GitHub operations.

日本語の概要は準備中です。原文の説明を表示しています。

End-to-end pooled and single-cell CRISPR screen analysis from FASTQ to hit genes. Orchestrates library design QC, guide counting, six-stage screen QC (plasmid Gini, replicate Pearson, CEGv2 PR-AUC, copy-number artifact), method-appropriate hit calling across MAGeCK RRA/MLE, BAGEL2, drugZ, JACKS, and Chronos, cancer-cell-line copy-number correction (CRISPRcleanR / Chronos), batch correction for multi-batch screens, and the specialized branches for combinatorial paralog screens, single-cell Perturb-seq, base-editor variant-function screens, prime-editor screens, and in vivo bottleneck-aware screens. Use when analyzing any pooled CRISPR screen end-to-end, matching the hit-calling method to the experimental design, integrating copy-number correction into the pipeline, or branching the workflow for single-cell, combinatorial, base-editor, prime-editor, or in vivo variants.

日本語の概要は準備中です。原文の説明を表示しています。

Manage Git branches, merges, conflicts, commits, and release baselines. Use for repository history and change-management operations.

日本語の概要は準備中です。原文の説明を表示しています。

Detect positive (diversifying / episodic / pervasive) selection using codon dN/dS frameworks. Implements PAML codeml site models (M0/M1a/M2a/M7/M8/M8a), branch models, branch-site model A (Zhang 2005), and HyPhy methods (BUSTED, BUSTED-S, BUSTED-MH, BUSTED-PH, MEME, FEL, FUBAR, aBSREL, SLAC, RELAX, GARD, FUBAR-MH). Includes McDonald-Kreitman framework (asymptotic alpha, impMKT, polyDFE, DFE-alpha, GRAPES) for within-species + divergence inference, RERconverge for trait-correlated rate shifts, CSUBST for convergent substitution, and PhyloAcc for accelerated noncoding evolution. Use when testing adaptive evolution at codons, branches, or full gene; running GARD recombination pre-screen; controlling alignment-error and gBGC false positives; reconciling PAML vs HyPhy results; or performing genome-scale selection scans.

日本語の概要は準備中です。原文の説明を表示しています。

Automate Bitbucket repositories, pull requests, branches, issues, and workspace management via Rube MCP (Composio). Always search tools first for current schemas.

日本語の概要は準備中です。原文の説明を表示しています。

Restore working context saved earlier by /context-save. Loads the most recent saved state (across all branches by default) so you can pick up where you left off — even across Conductor workspace handoffs. Use when asked to "resume", "restore context", "where was I", or "pick up where I left off". Pair with /context-save. Formerly /checkpoint resume — renamed because Claude Code treats /checkpoint as a native rewind alias in current environments. (gstack)

日本語の概要は準備中です。原文の説明を表示しています。

Apply DESIGN, canon, and modules to every page in the inventory, producing a deployable static HTML site. Three render branches (approved page, template-applied sibling, unique render). Per-page, incremental, idempotent, content-preserving by default.

日本語の概要は準備中です。原文の説明を表示しています。

Build a throwaway prototype to flesh out a design before committing to it. Routes between two branches — a runnable terminal app for state/business-logic questions, or several radically different UI variations toggleable from one route. Use when the user wants to prototype, sanity-check a data model or state machine, mock up a UI, explore design options, or says "prototype this", "let me play with it", "try a few designs".

日本語の概要は準備中です。原文の説明を表示しています。

Structure git work with atomic commits, conventional messages, short-lived branches, and pre-commit hygiene. Load when committing, branching, resolving merge conflicts, organizing parallel work, or reviewing git history. Also triggers on "git workflow", "commit message", "conventional commits", "atomic commit", "branch strategy", "git worktree", "how should I commit this". Does not replace project-specific hook policies — complements them.

日本語の概要は準備中です。原文の説明を表示しています。

Automate Bitbucket repositories, pull requests, branches, issues, and workspace management via Rube MCP (Composio). Always search tools first for current schemas.

日本語の概要は準備中です。原文の説明を表示しています。

Detect positive (diversifying / episodic / pervasive) selection using codon dN/dS frameworks. Implements PAML codeml site models (M0/M1a/M2a/M7/M8/M8a), branch models, branch-site model A (Zhang 2005), and HyPhy methods (BUSTED, BUSTED-S, BUSTED-MH, BUSTED-PH, MEME, FEL, FUBAR, aBSREL, SLAC, RELAX, GARD, FUBAR-MH). Includes McDonald-Kreitman framework (asymptotic alpha, impMKT, polyDFE, DFE-alpha, GRAPES) for within-species + divergence inference, RERconverge for trait-correlated rate shifts, CSUBST for convergent substitution, and PhyloAcc for accelerated noncoding evolution. Use when testing adaptive evolution at codons, branches, or full gene; running GARD recombination pre-screen; controlling alignment-error and gBGC false positives; reconciling PAML vs HyPhy results; or performing genome-scale selection scans.

日本語の概要は準備中です。原文の説明を表示しています。

The standing order for local git state in every AI Matrx repo — zero worktrees, zero local branches, zero dirty files, zero open PRs, everything merged to origin/main, and no code ever lost. Use when you find a worktree, a local branch, a stale checkout, an unpushed commit, or a dirty tree in any repo under /Users/armanisadeghi/code, when asked to "clean up", "unify", "merge everything", or when you are tempted to create a worktree or branch. Works without any access to Arman.

日本語の概要は準備中です。原文の説明を表示しています。

One-time recovery when a shared checkout has drifted far from GitHub main: hundreds ahead/behind, stacked worktrees and PRs, a dirty tree nobody owns. Use when tempted to reset or force-push. NOT for the ordinary 30-minute release loop (operations/INTEGRATION_MAINTAINER.md).

日本語の概要は準備中です。原文の説明を表示しています。

Analyzes PHP codebase for test coverage gaps. Detects untested classes, methods, branches, exception paths, and edge cases. Provides actionable recommendations.

日本語の概要は準備中です。原文の説明を表示しています。

Git workflow and conventions for OneKey development. Use when creating branches, committing code, or creating PRs. Triggers on git, branch, commit, PR, pull request, merge, workflow.

日本語の概要は準備中です。原文の説明を表示しています。

[21] UNDERSTAND. Deep research workflow for this project using 150% scope (100% core + 50% boundary), evidence-based reasoning, and structured investigation notes. Use when the task requires investigation, root-cause analysis, or mapping unknown areas. Always maintain a research log file that captures findings, hypotheses, and next branches; use web.run when external verification is needed.

日本語の概要は準備中です。原文の説明を表示しています。

Automate Bitbucket repositories, pull requests, branches, issues, and workspace management via Rube MCP (Composio). Always search tools first for current schemas.

日本語の概要は準備中です。原文の説明を表示しています。

Full pull request lifecycle — create branches, commit changes, open PRs, monitor CI status, auto-fix failures, and merge. Works with gh CLI or falls back to git + GitHub REST API via curl.

日本語の概要は準備中です。原文の説明を表示しています。

Use when working with the fjo CLI or Forgejo/Gitea instances: repositories, issues, pull requests, releases, branches, comments, Actions, or authentication. Provides safe host-aware read/write workflows. Not for GitHub — use `using-gh-for-github` there.

日本語の概要は準備中です。原文の説明を表示しています。

Intelligent Git Flow branch creator that analyzes git status/diff and creates appropriate branches following the nvie Git Flow branching model.

日本語の概要は準備中です。原文の説明を表示しています。

Migration and code evolution instructions generator for GitHub Copilot. Analyzes differences between two project versions (branches, commits, or releases) to create precise instructions allowing Copilot to maintain consistency during technology migrations, major refactoring, or framework version upgrades.

日本語の概要は準備中です。原文の説明を表示しています。

Git commit, branch, and pull request conventions for create-vue-dsfr. Use before creating commits, branches, issues, or PRs. This skill has priority over other project skills for commit and PR work.

日本語の概要は準備中です。原文の説明を表示しています。

Apply DESIGN, canon, and modules to every page in the inventory, producing a deployable static HTML site. Three render branches (approved page, template-applied sibling, unique render). Per-page, incremental, idempotent, content-preserving by default.

日本語の概要は準備中です。原文の説明を表示しています。