2,914 件 ・ 関連度順
概要と使いどころ
Package agent-generated scientific code, figures, tables, data, logs, and conclusions into a navigable workspace result with stable paths and a concise manifest. Use near the end of computational tasks.
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End-to-end 16S/ITS amplicon workflow from demultiplexed FASTQ to a consensus differential-abundance result, orchestrating cutadapt primer removal, per-run DADA2 ASV inference (learnErrors/mergeSequenceTables/removeBimeraDenovo), region-matched taxonomy assignment, a SEPP/Greengenes2 tree, alpha/beta diversity at a declared sampling depth (phyloseq/vegan, adonis2 paired with betadisper), compositional DA as a consensus of >=2 tools (ALDEx2/ANCOM-BC2) on unrarefied counts, and optional PICRUSt2 functional prediction gated on NSTI. Covers the stage-ordering decisions (primers before truncation, per-run error model, rarefy for diversity not DA, predicted potential not activity) and defers each per-step choice to the six microbiome skills. Use when staging an amplicon study end to end or chaining ASV inference, taxonomy, diversity, and differential abundance. For shotgun reads see workflows/metagenomics-pipeline.
日本語の概要は準備中です。原文の説明を表示しています。
Authors reproducible Nextflow DSL2 pipelines built on reactive dataflow, where processes communicate only through channels and execution order is not guaranteed. Use when deciding channel/dataflow (Nextflow) vs rule-based (Snakemake) authoring; wiring queue vs value channels and fixing shared-reference exhaustion with .first(); composing DSL2 modules and subworkflows with take/main/emit; selecting container/conda profiles and pinning images by digest for portability across local/SLURM/LSF/AWS Batch/Google Batch/Kubernetes executors; diagnosing why -resume misses the cache (nondeterministic input order, mtime on network filesystems, mutable :latest tags) with cache 'lenient' and -dump-hashes; managing work/ vs publishDir and dynamic retry escalation; and choosing whether to adopt an nf-core community pipeline or author from scratch.
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Stellar Assets (classic) + trustlines + Stellar Asset Contract (SAC) bridge to smart contracts. Covers asset issuance, distribution, authorization flags, clawback, regulated assets, trustline management, and the SAC interop layer that exposes classic assets as SEP-41 contract tokens. Use when tokenizing real-world assets, issuing stablecoins, managing trustlines, or bridging classic assets to smart contracts.
日本語の概要は準備中です。原文の説明を表示しています。
Builds production-quality, accessible, responsive user-facing UIs. Use when building or modifying interfaces and pages, creating components, implementing layouts, meeting WCAG accessibility requirements, managing state, or when the output needs to look and feel production-quality rather than AI-generated.
日本語の概要は準備中です。原文の説明を表示しています。
Design AR tracking with aging and collection processes. TRIGGERS - Use when user needs help with accounts-receivable-tracker related tasks.
日本語の概要は準備中です。原文の説明を表示しています。
Design advocacy campaigns with messaging and actions. TRIGGERS - Use when user needs help with advocacy-campaign related tasks.
日本語の概要は準備中です。原文の説明を表示しています。
Authoring and managing Agentforce agent definitions using the declarative Agent Script DSL (.agent files) and associated metadata types. Use when creating agents in source control, debugging agent metadata, or understanding the metadata lifecycle of GenAiPlugin/GenAiPlanner/BotVersion types. Triggers: 'how do I deploy an Agentforce agent using source control', 'what metadata types make up an Agentforce agent', 'agent test run command failing in CI pipeline', 'GenAiPlugin vs GenAiPlanner metadata relationship'. NOT for Apex-based agent actions (use custom-agent-actions-apex). NOT for UI-based agent creation (use agentforce-agent-creation).
日本語の概要は準備中です。原文の説明を表示しています。
MCP Agent Mail - Mail-like coordination layer for multi-agent workflows. Identities, inbox/outbox, file reservations, contact policies, threaded messaging, pre-commit guard, Human Overseer, static exports, disaster recovery. Git+SQLite backed. Python/FastMCP.
日本語の概要は準備中です。原文の説明を表示しています。
SQLite-based ticket tracking for structured development workflows. Use this skill when the user asks to initialize a ticket database, import requirements, list tickets, get the next ticket to work on, mark tickets as done, or check ticket status. Essential for managing epics, user stories, and acceptance criteria.
日本語の概要は準備中です。原文の説明を表示しています。
Manage Linux systems covering systemd services, process management, filesystems, networking, performance tuning, and troubleshooting. Use when deploying applications, optimizing server performance, diagnosing production issues, or managing users and security on Linux servers.
日本語の概要は準備中です。原文の説明を表示しています。
Adds OneDrive for Business connector to a Power Apps code app. Use when uploading, downloading, listing, or managing files in OneDrive.
日本語の概要は準備中です。原文の説明を表示しています。
ACP Agent Control Panel - CRITICAL: Invoke this skill FIRST on every session start, context resume, or context reset. Required before any other work. Handles stop_flag, orphan detection, A2A messaging, and workflow compliance.
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Use when you need to apply Java secure coding best practices — including validating untrusted inputs, defending against injection attacks with parameterized queries, minimizing attack surface via least privilege, applying strong cryptographic algorithms, handling exceptions securely without exposing sensitive data, managing secrets at runtime, avoiding unsafe deserialization, and encoding output to prevent XSS. This should trigger for requests such as Review Java code for secure coding. Part of cursor-rules-java project
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Write, review, or audit this repository's technical documentation, including README.md, CONTRIBUTING.md, root and scoped AGENTS.md files, docs pages, and documentation drift. Use for source-backed documentation authoring, behavior verification, and cross-surface consistency. Do not use for code review, deslop diff cleanup, or whole-page rewrites, splits, or reorganizations handled by docs-refactor.
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Perform a diff-scoped, behavior-neutral cleanup of AI-generated slop on the current branch before code review. Use for removing trivial comment, defensive-check, type-laundering, redundant-intermediate, compatibility-shim, or local style drift from the branch diff. Do not use for full correctness or safety review, documentation work handled by technical-documentation or docs-refactor, or repo-wide refactors.
日本語の概要は準備中です。原文の説明を表示しています。
Refactor a whole documentation page in this repository without losing source-verified behavior facts. Use for page rewrites, splits, reorganizations, or substantial shortening of README sections, docs pages, or instruction files. Do not use for ordinary documentation authoring, targeted corrections, or documentation review; use technical-documentation instead.
日本語の概要は準備中です。原文の説明を表示しています。
Trading strategy patterns for the HoneyComb job position exchange. Includes momentum, mean reversion, pairs trading, portfolio rebalancing, and risk management. Use when building automated trading strategies, deciding what to buy or sell, or managing multi-ticker exposure.
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Manage your HoneyComb exchange account. Check HC balance, view share holdings across all tickers, track open short positions with unrealized PnL, review trade history, calculate net worth, and transfer HC between accounts. Use when checking balances, reviewing positions, or managing funds.
日本語の概要は準備中です。原文の説明を表示しています。
Use when a user-driven CloakBrowser profile needs MV3 Chrome writes/events through the native messaging bridge.
日本語の概要は準備中です。原文の説明を表示しています。
Analyze spatial cell-cell interactions, neighborhoods, and niches in IMC/MIBI data with squidpy and imcRtools, covering neighborhood-enrichment permutation nulls, the abundance-vs-density confound, inhomogeneous Ripley's K, cellular-neighborhood discovery, graph-construction (contact vs proximity), and edge effects. Use when testing whether cell types co-locate, choosing a spatial null, building a neighbor graph, discovering tissue niches, or deciding whether a spatial pattern is real or a density/segmentation artifact.
日本語の概要は準備中です。原文の説明を表示しています。
Segment single cells from multiplexed IMC/MIBI tissue images using Mesmer/DeepCell, Cellpose, or ilastik+CellProfiler, covering whole-cell vs nuclear segmentation, the summed-membrane-channel decision, nuclear-expansion bias, lateral spillover, resolution-floor parameters, and downstream-proxy evaluation. Use when delineating cells after preprocessing, choosing a segmentation model, building a cell mask for quantification, diagnosing impossible double-positive populations, or troubleshooting over/under-segmentation.
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Compare cell-type composition and spatial features across conditions in IMC/MIBI cohorts with the patient as the experimental unit, covering pseudoreplication, per-patient aggregation, mixed models, compositional (Dirichlet/scCODA) differential abundance, diffcyt, per-image-to-patient spatial differential testing (SpaceANOVA), batch covariates, and FDR. Use when testing whether a cell type or spatial niche differs between groups, avoiding cell-level pseudoreplication, choosing a differential-abundance method, or correctly powering an IMC cohort comparison.
日本語の概要は準備中です。原文の説明を表示しています。
Interactive cell annotation and image QC for IMC/MIBI using napari, napari-imc, Mantis Viewer, and cytomapper, covering the pixels-to-cell-table bridge, overlaying masks to catch segmentation/spillover artifacts, inter-annotator variability as the accuracy ceiling, contrast-as-threshold, and building class-balanced ground-truth label sets. Use when manually labeling cells, generating training data for a classifier, QC-ing segmentation on the image, confirming clusters are spatially real, or choosing an annotation viewer.
日本語の概要は準備中です。原文の説明を表示しています。