「datasets」の検索結果

Multiagent AI system for scientific research assistance that automates research workflows from data analysis to publication. This skill should be used when generating research ideas from datasets, developing research methodologies, executing computational experiments, performing literature searches, or generating publication-ready papers in LaTeX format. Supports end-to-end research pipelines with customizable agent orchestration.

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Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.

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Python library for genomic interval ML. Train/apply region2vec embeddings turning BED regions into vectors, index interval datasets for ML, search embedding space with BEDSpace, and evaluate embedding quality. Use for chromatin accessibility clustering, regulatory element classification, and cross-sample region comparison.

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Therapeutics Data Commons (TDC) AI-ready drug discovery datasets. Curated ADME, toxicity, DTI, DDI with scaffold/cold splits, standardized metrics, molecular oracles, and ADMET benchmarks for therapeutic ML and property prediction. For chemical database queries use chembl-database-bioactivity; for featurization use molfeat.

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Open-source FAIR biology data framework. Version artifacts (AnnData, DataFrame, Zarr), track lineage, validate via ontologies (Bionty), query datasets. Integrates with Nextflow, Snakemake, W&B, scVI. For scRNA-seq use scanpy; for ontology lookups use bionty.

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Python library for healthcare ML on EHR data: process MIMIC-III/IV, eICU, OMOP-CDM; encode medical codes (ICD, ATC, NDC); build patient-level datasets; train Transformer, RETAIN, GRASP, MedBERT for mortality, drug recommendation, readmission, diagnosis prediction. Alternatives: FIDDLE (preprocessing), clinical-longformer (clinical NLP), ehr-ml (embeddings).

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Structured hypothesis formulation: turn observations into testable hypotheses with predictions, propose mechanisms, design experiments. Follows the scientific method. Use scientific-brainstorming for open ideation; hypogenic for automated LLM hypothesis testing on datasets.

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Search the PRIDE Archive v3 REST API for proteomics datasets: discover projects by keyword + faceted filters (organism, instrument, disease, software), fetch project metadata, list and download RAW/PEAK/RESULT/FASTA files (with FTP/Aspera URLs), look up which projects mention a UniProt accession, and find similar projects. PRIDE v3 no longer exposes peptide/PSM-level identification endpoints — for spectrum-level data download the project's RESULT files. Use uniprot-protein-database for protein sequences; interpro-database for domain architecture.

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Three-tiered sgRNA design guide using validated Addgene sequences, CRISPick pre-computed datasets, or de novo design rules for CRISPR experiments

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Query and download NCI Imaging Data Commons (IDC) cancer radiology and pathology datasets via the idc-index Python client. No authentication required: the parquet index ships inside the pip wheel, SQL runs locally via DuckDB, and DICOM downloads stream from public S3/GCS buckets through s5cmd. Use sql_query() for DuckDB cohort selection, get_collections/get_patients/get_dicom_studies/get_dicom_series for hierarchical browsing, download_from_selection() for downloads, and get_viewer_URL() for OHIF/Slim links. Use pydicom-medical-imaging for local DICOM reading; histolab for whole-slide pathology preprocessing.

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Read, decompose, and analyze IEEE-style papers using routed technical-reading workflows. Use when extracting problem setting, object-method-condition logic, contributions, method pipeline, equations, datasets, baselines, metrics, ablations, limitations, replication details, citation role, related-work positioning, implementation notes, or reviewer-style assessment from a paper, PDF, abstract, or manuscript excerpt.

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Use when evaluating a newly adapted model's accuracy/eval score. Runs evalscope eval (or the test/srt/run_eval.py fallback) against an OpenAI-compatible endpoint on datasets like gsm8k / aime, producing per-dataset reports and a score. Accuracy only — throughput/latency benchmarks belong to model-speed-benchmark. Triggers on accuracy, eval, evalscope, gsm8k, aime, run_eval — not throughput.

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Analyze large-scale construction datasets. Process thousands of projects for patterns, benchmarks, and predictive insights.

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Integrate open construction datasets. Combine open data sources for enhanced analysis

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Comprehensive Pandas toolkit for construction data analysis. Filter, group, aggregate BIM elements, calculate quantities, merge datasets, and generate reports from structured construction data.

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Generate realistic synthetic data using Spark + Faker (strongly recommended). Supports serverless execution, multiple output formats (Parquet/JSON/CSV/Delta), and scales from thousands to millions of rows. For small datasets (<10K rows), can optionally generate locally and upload to volumes. Use when user mentions 'synthetic data', 'test data', 'generate data', 'demo dataset', 'Faker', or 'sample data'.

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MLflow 3 GenAI agent evaluation. Use when writing mlflow.genai.evaluate() code, creating @scorer functions, using built-in scorers (Guidelines, Correctness, Safety, RetrievalGroundedness), building eval datasets from traces, setting up trace ingestion and production monitoring, aligning judges with MemAlign from domain expert feedback, or running optimize_prompts() with GEPA for automated prompt improvement.

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Build RAG / unstructured-document evaluation datasets and demo documents (e.g. for Knowledge Assistant) on Databricks: generate synthetic PDFs locally, upload to Unity Catalog volumes, and pair each document with test questions for retrieval evaluation.

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Drive the agentkit CLI (aliases agentkit / ak) to scaffold, build, deploy, and manage agents on Volcengine AgentKit from the terminal — runtimes, knowledge bases, memory collections, tools, harnesses, invocation, SSO auth, sandboxes, and evaluation datasets. Use when a user wants to create/deploy an agent project, call or inspect a deployed runtime, manage AgentKit resources, or resolve a CLI/auth/deploy error. Does NOT handle non-AgentKit deployment, general Docker/k8s operations, Volcengine IAM management, or writing agent application code (use veadk-agent-development for that).

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Routes multi-tool workflows through MCP servers for large datasets and pipelines. Use when Bash tool overhead is limiting throughput on data-heavy tasks.

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Deploys swarms of sub-agents for massive parallel data processing tasks. Unlike agent-army (which is for code changes), this is for DATA tasks -- processing 1000 documents, analyzing datasets, bulk content generation. Configurable swarm size, task distribution, result aggregation, progress tracking, and error recovery.

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Route Flower repository tasks for app authoring, strategies and mods, local simulation and deployment, Flower Datasets and examples, and repository maintenance.

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Operate FastReID setup, configuration, datasets, model/inference APIs, training/evaluation workflows, deployment/export paths, and extension projects for person and vehicle re-identification.

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Use FFCV to convert datasets into .beton files, build fast PyTorch loader pipelines, handle image and custom fields/transforms, and tune cache, traversal, and throughput behavior.

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