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概要と使いどころ
Search NCBI databases using Biopython Bio.Entrez (ESearch, EInfo, EGQuery, ESpell). Use when finding records by keyword, building reproducible field-qualified queries, navigating the Entrez Query Translator, exploiting the history server for large result sets, handling retmax caps, or interpreting weekly index lag. Covers PubMed, Nucleotide, Protein, Gene, SRA, GEO, Assembly, Taxonomy, ClinVar, dbSNP.
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Read and write compressed sequence files (gzip, bzip2, BGZF) using Biopython. Use when working with .gz or .bz2 sequence files. Use BGZF for indexable compressed files.
日本語の概要は準備中です。原文の説明を表示しています。
Differential abundance testing for microbiome data using compositionally-aware methods like ALDEx2, ANCOM-BC2, and MaAsLin2. Use when identifying taxa that differ between experimental groups while accounting for the compositional nature of microbiome data.
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Analyze codon usage, calculate CAI (Codon Adaptation Index), and examine synonymous codon bias using Biopython. Use when analyzing coding sequences for expression optimization or evolutionary analysis.
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Sort alignment files by coordinate or read name using samtools and pysam. Use when preparing BAM files for indexing, variant calling, or paired-end analysis.
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Create and use BAI/CSI indices for BAM/CRAM files using samtools and pysam. Use when enabling random access to alignment files or fetching specific genomic regions.
日本語の概要は準備中です。原文の説明を表示しています。
Discover and invoke 1,676 deduplicated biomedical AI agent skills from the Awesome Bio Agent Skills repository (20 source repos, 15 categories). Use this skill as a router whenever a user needs a bioinformatics/biomedical task (genomics, transcriptomics, single-cell, proteomics, protein design, clinical, epigenomics, multi-omics, pathway, metagenomics, database queries, visualization, workflows): search the index, locate the best-matching skill, fetch its SKILL.md, and follow it.
日本語の概要は準備中です。原文の説明を表示しています。
Workflow for read alignment, sorting, indexing, mapping statistics, and downstream-ready alignment artifacts.
日本語の概要は準備中です。原文の説明を表示しています。
Get current weather conditions and forecasts for any location worldwide. Returns temperature, humidity, wind, precipitation, UV index, and multi-day forecasts. Useful for travel planning, event scheduling, and logistics coordination.
日本語の概要は準備中です。原文の説明を表示しています。
Use trace-mcp through bb to search indexed code and recall project decisions with compact context.
日本語の概要は準備中です。原文の説明を表示しています。
Implement or refactor Formax tool transcript UI using the Tool UI Blocks (C-lite) pattern (ToolUiBlocks renderer + blocks presenters) to avoid touching many tool presenter files; use when adjusting ⏺/⎿ spacing, indent rules, or migrating additional tools to blocks presenters with targeted Ink/Vitest tests and Codex review before commit.
日本語の概要は準備中です。原文の説明を表示しています。
Use when the user wants a reusable rolling execution pattern (README + TODO-INDEX) like plans/web-reference-react-refactor, and wants to run delivery in small validated loops.
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Run trace-mcp security, quality-gate, and antipattern checks before committing or opening a PR. Activate when the agent is about to create a commit or pull request in a project indexed by trace-mcp.
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Use trace-mcp tools for code navigation, impact analysis, and framework-aware queries instead of Read/Grep/Glob/Bash. Activate whenever the agent needs to explore, understand, or modify a codebase that has trace-mcp indexed.
日本語の概要は準備中です。原文の説明を表示しています。
Cross-agent self-inspection of your AI-agent stack. Audits skills, MCP servers, hooks, plugins, commands, credentials, and memory files across Claude Code, Codex, OpenClaw, and NanoClaw. Produces a structured inventory and narrative briefing with cross-ecosystem risk analysis. Use when the user asks to audit their own setup, check what they have installed, review their agent stack security posture, or understand cross-tool interactions. Use when a user has accumulated skills/plugins/MCP servers over time and wants visibility into their attack surface. Use after installing new skills or plugins. Do NOT use for vetting external code before install (that is repo-forensics). Do NOT use for incident response during active attacks. Do NOT use for fixing or patching vulnerabilities (forensify is read-only).
日本語の概要は準備中です。原文の説明を表示しています。
Hold every response to the ISO 24495 plain-language rules, and route to the sector skills. Codex has no output style, so these rules are a skill.
日本語の概要は準備中です。原文の説明を表示しています。
Internal — for Boundless team members only. Query AWS CloudWatch logs for Boundless services (provers, slasher, distributor, order stream, order generator, indexer, signal) on prod/staging environments. Use when the user asks to look at service logs, debug service behavior from log output, search logs for a request ID, or investigate errors using CloudWatch. Do NOT use for debugging local code changes, reviewing PRs, or investigating issues in the codebase itself.
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Produce an intensive, cited analytical report: executive summary, multi-angle findings, contrarian views, open questions, and full sources. Use only when the user needs rigorous synthesis of a complex topic (scientific, technical, policy, or market-analytical) that cannot be answered with a short search, and wants a formal written report, not a recommendation list. Do not use for product picks, top-N lists, quick lookups, or routine "find out about X" tasks. If the request does not clearly need this kind of report, do not use this skill. Do not use for a literature review over published papers. This skill collects evidence from the open web. A request for the literature on a biomedical, clinical, life-science, or other scientific topic — papers, studies, trials, preprints — belongs to firecrawl-research-papers, which queries Firecrawl's paper index (PubMed, bioRxiv, medRxiv, arXiv) instead of searching websites.
日本語の概要は準備中です。原文の説明を表示しています。
Find and synthesize research papers, whitepapers, PDFs, technical reports, and academic sources with Firecrawl Research, using semantic paper search, related-paper expansion, and in-body verification over Firecrawl's paper index — largely biomedical and life-science literature from PubMed, bioRxiv, and medRxiv, plus arXiv preprints in CS, physics, and math. Use when the user wants a literature review, systematic review, survey of studies, paper summary, research landscape, or sourced synthesis from scholarly and industry publications, including clinical, drug, gene, disease, epidemiology, and public-health topics. Prefer this over a general web-research workflow whenever the evidence base is published papers rather than web pages.
日本語の概要は準備中です。原文の説明を表示しています。
Structured persuasion for tech leads, PMs, and founders—not activity logs. Five scenarios (kickoff, status update, wrap-up, investor pitch, solution selling) on one 5-part framework (Hook→Context→Proposal→Evidence→Ask). AI prompts for missing materials and audience context; pre-submit checklist. Claude Code plugin; Cursor, Codex, and chat via prompts.
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Kaggle-first end-to-end competition workflow for scored submissions. Use when Codex must run Kaggle or competitive ML workflows through scored submission, including code competitions, validation, metrics, policy-safe public notebook/discussion intel, tabular/text/image modeling, tuning, ensembling/stacking, proactive multi-notebook architectures, producer notebooks that train models and export private Kaggle artifact datasets, downstream consumer notebooks, Kaggle GPU offload, kagglehub access, hidden-test debugging, and public score retrieval.
日本語の概要は準備中です。原文の説明を表示しています。
Use when tutoring a learner through MATLAB debugging, error interpretation, failed tests, incorrect outputs, array-shape problems, indexing mistakes, function argument issues, or code repair practice. Use for guided debugging sessions, debugging drills, teach-the-agent critique, and evidence-based MATLAB troubleshooting.
日本語の概要は準備中です。原文の説明を表示しています。
PM skill for Claude Code, Codex, Cursor, and Windsurf. Diagnoses SaaS metrics, critiques PRDs, plans roadmaps, runs discovery, coaches PM career transitions, pressure-tests AI product decisions, and designs PLG growth strategies. Seven knowledge domains, 12 templates, 40+ frameworks, and an opinionated interaction style that labels assumptions and names tradeoffs.
日本語の概要は準備中です。原文の説明を表示しています。
Craft verifiable, tight goal prompts for AI coding agents (Claude Code /goal, Codex Automations, Pi), either from a standalone task interview or from an already-approved to-goal handoff. Use when the user says "给我一个 goal 提示词", "帮我写个 goal", "设置一个自动化任务", "我想让 agent 自动做 X", or asks to turn a task into a self-running loop. Ensures every goal has a checkable completion criterion so the agent knows when it's done.
日本語の概要は準備中です。原文の説明を表示しています。