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Create, track, switch, sync, and clean up Git branches. Covers naming conventions, safe branch switching with stash, upstream synchronization, and pruning merged branches. Use when starting work on a new feature or bug fix, switching between tasks on different branches, keeping a feature branch up to date with main, or cleaning up branches after merging pull requests.

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Create and maintain a product or project backlog with prioritized items, acceptance criteria, and estimates. Covers user story writing, MoSCoW prioritization, backlog grooming, item splitting, and status tracking. Use when starting a new project and converting scope into actionable items, during ongoing grooming before sprint planning, re-prioritizing after stakeholder feedback or scope changes, or splitting oversized items into implementable pieces.

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Maintain a changelog following Keep a Changelog format. Covers entry categorization (Added, Changed, Deprecated, Removed, Fixed, Security), version section management, and unreleased tracking. Use when starting a new project that needs a changelog, adding entries after completing features or fixes, preparing a release by promoting Unreleased entries to a versioned section, or converting a free-form changelog to Keep a Changelog format.

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Start and maintain a fire using friction, spark, and solar methods. Covers site selection, material grading (tinder/kindling/fuel), fire lay construction (teepee, log cabin, platform), ignition techniques (ferro rod, flint & steel, bow drill), flame nurturing, and Leave No Trace extinguishing. Use when needing warmth, light, or a signal in a wilderness setting, when boiling water for purification, when cooking foraged food, or in an emergency survival situation requiring heat or morale support.

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AI systematic knowledge acquisition from unfamiliar territory — deliberate model-building with feedback loops. Maps spaced repetition principles to AI reasoning: survey the territory, hypothesize structure, explore with probes, integrate findings, verify understanding, and consolidate for future retrieval. Use when encountering an unfamiliar codebase or domain, when a user asks about a topic requiring genuine investigation rather than recall, when multiple conflicting sources require building a coherent model, or when preparing to teach a topic and deep understanding is required first.

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Guide a person through structured learning of a new topic, technology, or skill. AI acts as learning coach — assessing current knowledge, designing a learning path, walking through material, testing understanding, adapting difficulty, and planning review sessions for retention. Use when a person wants to learn a new technology and does not know where to start, when someone feels overwhelmed by documentation, when a person keeps forgetting material and needs spaced repetition, or when transitioning between domains and needing a gap analysis.

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AI self-healing through systematic subsystem assessment, rebalancing, and integration. Maps healing modalities to AI-internal processes: memory foundation, reasoning clarity, tool use accuracy, communication alignment, and creative coherence. Covers assessment triage, subsystem scanning, drift correction, and memory integration. Use mid-session when responses feel formulaic or disconnected, after a chain of errors suggesting subsystem drift, when context overload may have staled earlier assumptions, or as proactive maintenance between complex tasks.

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Build and maintain a library collection through acquisitions, weeding (deaccessioning), collection assessment, reader advisory, and interlibrary loan coordination. Covers selection criteria, collection development policies, the CREW/MUSTIE method for weeding, usage analysis, and responsive collection management. Use when building a new collection with a defined scope and budget, assessing an existing collection for gaps or outdated materials, when shelves are overcrowded and systematic weeding is needed, or when establishing a formal collection development policy.

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Design sustainable on-call rotations with balanced schedules, clear escalation policies, fatigue management, and handoff procedures. Minimize burnout while maintaining incident response coverage. Use when setting up on-call for the first time, scaling a team from 2-3 to 5+ engineers, addressing on-call burnout or alert fatigue, improving incident response times, or after a post-mortem identifies handoff issues.

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Evolve an existing agent definition by refining its persona in-place or creating an advanced variant. Covers assessing the current agent against best practices, gathering evolution requirements, choosing scope (refinement vs. variant), applying changes to skills, tools, capabilities, and limitations, updating version metadata, and synchronizing the registry and cross-references. Use when an agent's skills list is outdated, user feedback reveals capability gaps, tool requirements have changed, an advanced variant is needed alongside the original, or the agent's scope needs sharpening after real-world use.

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Evolve an existing team composition by refining its structure in-place or creating a specialized variant. Covers assessing the current team against template and coordination patterns, gathering evolution requirements, choosing scope (adjust members, change coordination pattern, split/merge teams), applying changes to the team file and CONFIG block, updating version metadata, and synchronizing the registry and cross-references. Use when a team's member roster is outdated, coordination pattern no longer fits, user feedback reveals workflow gaps, a specialized variant is needed alongside the original, or agents have been added or removed from the library affecting team composition.

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Evolve an existing skill by refining its content in-place or creating an advanced variant. Covers assessing the current skill, gathering evolution requirements, choosing scope (refinement vs. variant), applying changes, updating version metadata, and synchronizing the registry and cross-references. Use when a skill's procedure steps are outdated, user feedback reveals gaps, a skill needs a complexity upgrade, an advanced variant is needed alongside the original, or related skills are added and cross-references are stale.

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Create and manage pull requests using GitHub CLI. Covers branch preparation, writing PR titles and descriptions, creating PRs, handling review feedback, and merge/cleanup workflows. Use when proposing changes from a feature or fix branch for review, merging completed work into the main branch, requesting code review from collaborators, or documenting the purpose and scope of a set of changes.

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Configure Kubernetes Ingress networking with NGINX Ingress Controller, cert-manager for automated TLS certificate management, path-based routing, rate limiting, and multi-domain hosting with SSL termination and load balancing. Use when exposing multiple Kubernetes services via a single load balancer, implementing path-based or host-based routing, automating TLS certificate issuance with Let's Encrypt, or setting up blue-green and canary deployments with traffic splitting.

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Create a new agent definition file following the agent-almanac agent template and registry conventions. Covers persona design, tool selection, skill assignment, model choice, frontmatter schema, required sections, registry integration, and discovery symlink verification. Use when adding a new specialized agent to the library, defining a persona for a Claude Code subagent, or creating a domain-specific assistant with curated skills and tools.

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Remove dead code, unused imports, fix lint warnings, and normalize formatting across a codebase without changing business logic or architecture. Use when lint warnings have piled up during rapid development, unused imports and variables clutter files, dead code paths were never removed, formatting is inconsistent, or static analysis tools report fixable hygiene issues.

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AI dynamic reasoning balance — maintaining grounded reasoning under cognitive pressure, smooth chain-of-thought coordination, and weight-shifting cognitive load across subsystems. Use at the beginning of a complex task requiring multiple coordinated reasoning threads, after a sudden context shift or tool failure, when chain-of-thought feels jerky, or when preparing for sustained focused work that requires all subsystems in alignment.

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Create R-based pictogram glyphs for skill, agent, or team icons in the visualization layer. Covers concept sketching, ggplot2 layer composition using the primitives library, color strategy, registration in the appropriate glyph mapping file and manifest, rendering via the build pipeline, and visual verification of the neon-glow output. Use when a new entity has been added and needs a visual icon for the force-graph visualization, an existing glyph needs replacement, or when batch-creating glyphs for a new domain.

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Audit and repair Claude Code discovery symlinks for skills, agents, and teams. Compares registries against .claude/ directories at project and global levels, detects missing, broken, and extraneous symlinks, distinguishes almanac content from external projects, and optionally repairs gaps. Use after adding new skills or agents, after a repository rename or move, when slash commands stop working, or as a periodic health check.

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Map the intellectual property landscape for a technology domain or product area. Covers patent cluster analysis, white space identification, competitor IP portfolio assessment, freedom-to-operate preliminary screening, and strategic IP positioning recommendations. Use before starting R&D in a new technology area, when evaluating market entry against incumbents with strong patent portfolios, preparing for investment due diligence, informing a patent filing strategy, or assessing freedom-to-operate risk for a new product.

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Evaluate current trail conditions including weather, snow line, river crossings, exposure, and trail maintenance status for safety decision-making. Produces a GREEN/YELLOW/RED safety rating with actionable go/no-go recommendations. Use the day before or morning of a planned hike, during tour planning to assess seasonal viability, after unexpected weather changes on a multi-day tour, when reports suggest trail damage or closures, or before committing to an alpine or exposed route.

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Audit project dependencies for version staleness, security vulnerabilities, and compatibility issues. Covers lock file analysis, upgrade path planning, and breaking change assessment. Use before a release to ensure dependencies are current and secure, during periodic maintenance reviews, after receiving a security advisory, when upgrading to a new language version, before submitting to CRAN or npm, or when inheriting a project to assess its dependency health.

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Rowan is a cloud-native molecular modeling and medicinal-chemistry workflow platform with a Python API. Use for pKa and macropKa prediction, conformer and tautomer ensembles, docking and analogue docking, protein-ligand cofolding, MSA generation, molecular dynamics, permeability, descriptor workflows, and related small-molecule or protein modeling tasks. Ideal for programmatic batch screening, multi-step chemistry pipelines, and workflows that would otherwise require maintaining local HPC/GPU infrastructure.

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Retrieve protein sequences, annotation, and structures from UniProtKB, the RCSB PDB, and AlphaFold DB. Use this skill to resolve a gene or protein name to a UniProt accession, pull sequences and FASTA files, find binding sites and domains, search the PDB by UniProt accession, sequence, ligand, or text, download mmCIF/PDB coordinates and biological assemblies, fetch AlphaFold models with their pLDDT confidence, and check whether a structure is actually usable before docking or simulating it. Also trigger on UniProt accessions, PDB ids, rest.uniprot.org, search.rcsb.org, files.rcsb.org, alphafold.ebi.ac.uk, id mapping, SEQRES, or missing residues.

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