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Use when you need to verify a Simulink model is compatible with SLCI code inspection, or to apply fixes for identified incompatibilities. Checks model configuration, identifies incompatibilities, and explains why each constraint is required for verification. Also invoked by slci-inspection-incompatibility-analysis to fix constraints and obtain compatibility results. Trigger keywords: checkCompatibility, SLCI compatibility, code inspection readiness, Model Advisor compatibility report.

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Basecalls raw Oxford Nanopore signal (POD5/FAST5) into reads with Dorado, choosing the chemistry-matched model and accuracy tier (fast/hac/sup), requesting modified bases (5mCG_5hmCG, 6mA, m6A) at basecall time, and handling duplex, demultiplexing, trimming, and HERRO read correction. Covers why the model+version is an irreversible analysis decision, why methylation cannot be recovered later, and why downstream polish/variant models must match the basecaller. Use when converting POD5/FAST5 to reads, picking a Dorado model for R9/R10 or RNA004, enabling methylation calling, basecalling duplex, demultiplexing barcoded runs, or correcting reads for assembly.

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Predict RBP binding from RNA sequence using deep learning models (RBPNet sequence-to-signal, RNAProt RNN, GraphProt2 GCN with structure, DeepCLIP, DeepRiPe multi-modal CNN) for variant-effect prediction, in silico binding-site discovery, model interpretation, and transfer learning from CLIP and RBNS datasets. Use when computational prediction of RBP binding from sequence is needed, evaluating variant effects on binding without further wet-lab experiments, comparing model performance, or training a custom model on ENCODE eCLIP data.

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Implement computer vision features including text recognition (OCR), face detection, barcode scanning, image segmentation, object tracking, and document scanning in iOS apps. Covers both the modern Swift-native Vision API (iOS 18+) and legacy VNRequest patterns, VisionKit DataScannerViewController for live camera scanning, and CoreMLRequest/VNCoreMLRequest for custom model inference. Use when adding OCR, barcode scanning, face detection, or custom Core ML model inference with Vision.

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Apply modern Swift language patterns and idioms for non-concurrency, non-SwiftUI code. Covers if/switch expressions (Swift 5.9+), typed throws (Swift 6+), result builders, property wrappers, opaque and existential types (some vs any), guard patterns, Never type, Regex builders (Swift 5.7+), basic Codable shaping (CodingKeys, custom decoding, nested containers), modern collection APIs (count(where:), contains(where:), replacing()), basic FormatStyle usage, and string interpolation patterns. Use when writing core Swift code involving generics, protocols, enums, closures, or modern language features; route deep Codable to swift-codable, detailed formatting/localization to swift-formatstyle, and API naming to swift-api-design-guidelines.

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Port MATLAB Data Acquisition Toolbox code from the discouraged (legacy) session-based interface (daq.createSession, addAnalogInputChannel, startBackground, DataAvailable listeners, queueOutputData, wait) to the recommended DataAcquisition interface (daq("ni"), addinput, start, ScansAvailableFcn, write, preload). Use when migrating legacy DAQ scripts, converting session-API calls, working with DataAcquisition objects, writing multi-feature DAQ scripts that combine triggers, callbacks, continuous acquisition, or analog output. Also use when a user says their DAQ script "used to work" or "errors on R20XX", since modernizing legacy session-API code is a frequent fix for those failures. Trigger keywords: daq, DAQ, NI, session interface, addtrigger, addclock, ScansAvailableFcn, ScansRequiredFcn, daq.createSession, addAnalogInputChannel, startBackground, queueOutputData, DataAvailable, evt.Data, evt.TimeStamps, wait(d), preload, discouraged, legacy, modernize, R2020a.

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Audit model delegation and subagent effectiveness for a session — which models handled which subagent types, per-type success rates and average durations, and wasted delegations (heavy models on trivial work or types that consistently fail) — using the Agent Monitor workflow intelligence API. Use when reviewing how a session delegated work across models and subagents.

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Review, run, debug, and verify approved Python modeling code against its code plan, data contract, method decision, risk conditions, and experiment outputs, saving one compact JSON review.

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Generate and run minimal reproducible Python modeling code for the human-approved main method and usable baseline, saving compact experiment artifacts and a canonical run summary.

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STRIDE threat modeling, DREAD risk scoring, secret detection, and secure architecture design. Use when conducting threat models, reviewing code for vulnerabilities, designing defense-in-depth, or scanning for hardcoded secrets.

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Configure Temps as an MCP (Model Context Protocol) server so AI assistants can interact with a Temps instance directly -- listing/inspecting projects and deployments, and (when write mode is enabled) triggering deployments with human confirmation. Use when the user wants to: (1) Set up the Temps MCP server, (2) Connect Claude Code/Desktop, Codex, Cursor, VS Code, Windsurf, or Zed to Temps, (3) Add Temps tools to an AI assistant, (4) Test the MCP wizard locally, (5) Manage multiple Temps MCP connections (dev, staging, prod, or several local dev slots) side by side. Triggers: "temps mcp", "configure temps tools", "add temps to claude", "temps ai assistant", "mcp server setup", "mcp add", "test the mcp wizard".

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Configure or change the approved worker models for codex-on-crack, inspect available models and compatibility, preview role files, or undo a setup. The user selects the lead in Codex. Setup preserves root settings, credentials, unrelated agents, and config.toml.

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Lead substantial Codex builds with one configured implementation worker and lead acceptance. Use when the user requests codex-on-crack, names a model to delegate work to, asks to run subagents through Claude, or requests a lead/worker split. Keep host-only work direct; honor explicit external model choices. Workers must not invoke this orchestrator.

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Review Java concurrency code for thread safety, race conditions, deadlocks, and modern patterns (Virtual Threads, CompletableFuture, @Async). Use when user asks "check thread safety", "concurrency review", "async code review", or when reviewing multi-threaded code.

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Fix Elixir/Phoenix code until Codex CLI review comes back clean — bounded review, fix, verify loop before opening a PR. Use when codex is installed and you want an external cross-model critic on your changes before pushing.

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Fix Elixir/Phoenix code until Codex CLI review comes back clean — bounded review, fix, verify loop before opening a PR. Use when codex is installed and you want an external cross-model critic on your changes before pushing.

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Train or fine-tune SentenceTransformer bi-encoders, CrossEncoder rerankers, or SparseEncoder models, including losses, negatives, evaluation, distillation, LoRA, and Matryoshka. Use for sentence-transformers training tasks.

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Find and compare recommended Hugging Face models for a task using benchmarks, model size, and device constraints. Use for model selection questions; use huggingface-local-models for GGUF setup and hf-cli for Hub operations.

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Create a repository-grounded AppSec threat model covering assets, trust boundaries, attackers, abuse paths, and mitigations. Use only for explicit threat-modeling requests, not general architecture or code review.

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Generate or refresh a STRIDE-based threat model for the current repository using Bug Hunter-native artifacts. Use whenever the repository has no threat model yet, the architecture changed materially, a security review needs fresh trust-boundary context, or the user explicitly asks for a threat model.

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Write modern, version-aware C# for .NET repositories while staying compatible with the repo's target framework and language-version policy. USE FOR: modern idiomatic C# code; language-version compatibility decisions; upgrading or reviewing C# feature usage across versions. DO NOT USE FOR: non-C# .NET languages such as F# or VB; analyzer-only or formatter-only setup with no language feature choice. INVOKES: inspect the repository context, edit targeted files, and run relevant build, test, lint, or validation commands when changes are made.

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Generate or scaffold ASP.NET Core code — Razor Pages, Blazor components, MVC controllers, views, and Minimal API endpoints — without using ASP.NET Core CLI scaffolding/code-generation tools. Use when (1) adding CRUD pages, views, or API endpoints backed by Entity Framework (EF Core) and a database, (2) generating code to create, read, update, and delete data using a DbContext, (3) scaffolding UI components that match the project's existing CSS framework and coding patterns, or (4) creating data-driven forms, tables, and navigation for a model class. Do not use for non-ASP.NET projects or when CLI-based scaffolding is preferred.

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Integrate ManagedCode.Orleans.Graph into an Orleans-based .NET application for grain-call policy enforcement, deadlock detection, live-call telemetry, and Mermaid graph diagnostics. USE FOR: ManagedCode.Orleans.Graph integration; allowed grain transitions; Orleans call filters; live policy graphs; reviewing Orleans call-cycle risk. DO NOT USE FOR: generic graph data modeling or traversal unrelated to Orleans calls. INVOKES: inspect the repository context, edit targeted files, and run relevant build, test, lint, or validation commands when changes are made.

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Build, maintain, or modernize Windows Forms applications with practical guidance on designer-driven UI, event handling, data binding, MVP separation, and migration to modern .NET. USE FOR: working on Windows Forms UI, event-driven workflows, or classic LOB applications; migrating WinForms from .NET Framework to modern .NET; cleaning up oversized form code. DO NOT USE FOR: unrelated stacks; generic tasks that do not need this specific guidance. INVOKES: inspect the repository context, edit targeted files, and run relevant build, test, lint, or validation commands when changes are made.

日本語の概要は準備中です。原文の説明を表示しています。