588 件 ・ 関連度順
概要と使いどころ
Designing scientific schematics, diagrams, and graphical abstracts. Covers tool selection (BioRender, Inkscape, Affinity, PowerPoint), design principles for pathway diagrams, mechanism schematics, experimental workflows, and journal graphical abstracts. Includes composition, icon sourcing, color for biological entities, and accessibility. Use when creating illustrative (not data-driven) scientific figures.
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Read, write, and edit ChemDraw CDX/CDXML files with RDKit's rdkit.Chem.rdChemDraw plus direct XML editing, always paired with a rendered PNG. Parse molecules and reactions from .cdxml/.cdx, write structures with good 2D depiction, and hand-build or modify the parts RDKit cannot write: reaction arrows, plus signs, schemes/steps, and text/labels. Use for reaction schemes, synthesis routes, mechanisms, retrosynthesis, or SI figures. Critical: RDKit writes structures only — round-tripping a reaction through a Mol silently drops arrows and text; this skill shows the XML layer that preserves them. For pure molecular analysis (descriptors, fingerprints, SMARTS) use rdkit-cheminformatics; for multi-format 3D conversion use openbabel.
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Cancer Research (AACR) figures: resolution (300-1200 DPI), formats (EPS/TIFF/AI), hierarchical panel labels (Ai, Aii, Bi), figure/table limits, legend requirements with replicate counts.
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Interactive scientific visualization with Plotly. Two APIs: plotly.express (px) for one-liner DataFrame plots, plotly.graph_objects (go) for trace-level control. 40+ chart types with hover, zoom, pan, animation. Exports HTML or static PNG/SVG/PDF via kaleido. Use for volcano plots with gene hover, dose-response dashboards, expression heatmaps, 3D molecular views. Use seaborn for stats; matplotlib for publication figures.
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Assemble multiple plots into ONE publication-ready multi-panel journal figure (e.g. Figure 1 with panels A, B, C). Use whenever the user asks to combine, compose, or lay out several plots as a single composite figure — newly plotted from data or from already-rendered panels the user supplies (PNG/PDF). Ask the user to pick one of two approaches: (1) redraw every panel into one unified figure using independent, tightly packed `subfigures` (each sized to its own labels, so axes need NOT align), consistent style, correctly placed panel letters, and per-panel legends/colorbars; (2) composite already-rendered PNG/PDF panels onto a mosaic canvas and add panel letters (image compositing, not plotting). Both export vector PDF + high-DPI PNG. For a SINGLE plot from a data table, use the sibling `omics-plotting` skill instead.
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Low-level Python plotting for scientific figures: publication-quality line, scatter, bar, heatmap, contour, 3D; multi-panel layouts; fine control of every element. PNG/PDF/SVG export. Use seaborn for quick stats, plotly for interactive.
日本語の概要は準備中です。原文の説明を表示しています。
Guide for choosing and creating scientific visualizations for publications and talks. Covers chart-type selection by data structure, color theory for accessibility/print, figure composition, journal formatting (Nature, Cell, ACS), and common pitfalls. Consult when visualizing data or preparing submission figures.
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Guide for annotating statistical significance (p-value asterisks) on comparison plots. Covers standard notation (ns, *, **, ***, ****), matplotlib bracket+asterisk implementation, and use with seaborn box/violin/bar plots. Use when preparing publication-ready figures with significance markers.
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Summarize, organize, and normalize messy research materials into an IEEE-ready writing brief before manuscript drafting. Use when Codex needs to process a folder or collection of experiment logs, code files, AI chat exports, idea notes, literature summaries, related-work notes, copied introduction excerpts, Zotero-derived paper summaries, tables, figures, or scattered Markdown/text records and convert them into structured inputs for ieee-writing, ieee-experiment, ieee-citation, ieee-reviewer, or ieee-response.
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Audit, redesign, generate, and improve IEEE manuscript figures, tables, captions, result presentation, plotting scripts, visual polish, hybrid Python/R plus vector-editor workflows, publication-ready matplotlib house style, and layout using routed visual-evidence checks. Use when checking or creating plot readability, axes, legends, line overlap, table structure, metric reporting, captions, grayscale accessibility, IEEE one-column/two-column layout, figure/table placement, claim-evidence mapping, reviewer first-impression risks, matplotlib/seaborn or ggplot2 figure code, SVG/PDF/TIFF/PNG export, Illustrator/Inkscape/PowerPoint/Figma finishing plans, or IEEE-style engineering evidence graphics.
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Draft, diagnose, and improve IEEE rebuttals, revision plans, cover letters, response letters, and point-by-point replies using routed reviewer-comment handling. Use when responding to IEEE reviewer or editor comments about novelty, scope, method, experiments, baselines, figures, tables, citations, writing, LaTeX formatting, limitations, compliance, technical correctness, or reviewer comments that appear generic, contradictory, unsupported, careless, or possibly AI-generated.
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Provides AWS SAM bootstrap patterns: generates `template.yaml` and `samconfig.toml` for new projects via `sam init`, creates SAM templates for existing Lambda/CloudFormation code migration, validates build/package/deploy workflows, and configures local testing with `sam local invoke`. Use when the user asks about SAM projects, `sam init`, `sam deploy`, serverless deployments, or needs to bootstrap/migrate Lambda functions with SAM templates.
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Provides AWS Lambda integration patterns for PHP with Symfony using the Bref framework. Creates Lambda handler classes, configures runtime layers, sets up SQS/SNS event triggers, implements warm-up strategies, and optimizes cold starts. Use when deploying PHP/Symfony applications to AWS Lambda, configuring API Gateway integration, implementing serverless PHP applications, or optimizing Lambda performance with Bref. Triggers include "create lambda php", "deploy symfony lambda", "bref lambda aws", "php lambda cold start", "aws lambda php performance", "symfony serverless", "php serverless framework".
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Provides Amazon Bedrock patterns using AWS SDK for Java 2.x. Invokes foundation models (Claude, Llama, Titan), generates text and images, creates embeddings for RAG, streams real-time responses, and configures Spring Boot integration. Use when asking about Bedrock integration, Java SDK for AI models, AWS generative AI, Claude/Llama invocation, embeddings for RAG, or Spring Boot AI setup.
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Provides Spring Data Neo4j integration patterns for Spring Boot applications. Use when you need to work with a graph database, Neo4j nodes and relationships, Cypher queries, or Spring Data Neo4j. Creates node entities with @Node annotation, defines relationships with @Relationship, writes Cypher queries using @Query, configures imperative and reactive Neo4j repositories, implements graph traversal patterns, and sets up testing with embedded databases.
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Provides Event-Driven Architecture (EDA) patterns for Spring Boot — creates domain events, configures ApplicationEvent and @TransactionalEventListener, sets up Kafka producers and consumers, and implements the transactional outbox pattern for reliable distributed messaging. Use when implementing event-driven systems in Spring Boot, setting up async messaging with Kafka, publishing domain events from DDD aggregates, or needing reliable event publishing with the outbox pattern.
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Provides patterns for implementing Spring Boot caching: configures Redis/Caffeine/EhCache providers with TTL and eviction policies, applies @Cacheable/@CacheEvict/@CachePut annotations, validates cache hit/miss behavior, and exposes metrics via Actuator. Use when adding caching to Spring Boot services, configuring cache expiration, evicting stale data, or diagnosing cache misses.
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Provides and generates LangChain4j tool and function calling patterns: annotates methods as tools with @Tool, configures tool executors, registers tools with AiServices, validates tool parameters, and handles tool execution errors. Use when building AI agents that call tools, define function specifications, manage tool responses, or integrate external APIs with LLM-driven applications.
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Provides patterns to configure AWS RDS (Aurora, MySQL, PostgreSQL) with Spring Boot applications. Configures HikariCP connection pools, implements read/write splitting, sets up IAM database authentication, enables SSL connections, and integrates with AWS Secrets Manager. Use when setting up RDS connections in Spring Boot, configuring connection pooling, or managing database credentials securely.
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Provides integration patterns for LangChain4j with Spring Boot. Configures AI model beans, sets up chat memory with Spring context, integrates RAG pipelines with Spring Data, and handles auto-configuration, dependency injection, and Spring ecosystem integration. Use when embedding LangChain4j into Spring Boot applications, building Java LLM applications with @Bean configuration, or setting up Spring AI patterns.
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Produce a VAT / sales-tax summary for a period from a Well workspace's posted ledger. Use when the user asks for a VAT return, VAT summary, sales tax owed, output vs input VAT, or tax declaration figures for a period.
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Configures GitHub Actions CI/CD workflows for testing, linting, and deployment. Use when setting up automation for a Python, Rust, or TypeScript project.
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Configures pre-commit hooks for linting, type checking, formatting, and testing. Use when setting up a new project or adding quality gates to an existing one.
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Use when choosing where to submit a manuscript. Matches the abstract against curated journal profiles and returns ranked picks with scope fit, AI-disclosure policy, an acceptance-readiness pre-flight and a reject-fallback cascade. Impact and APC figures may be stale.
日本語の概要は準備中です。原文の説明を表示しています。