「matrix」の検索結果

Pick the right ComfyUI startup flags for VRAM, attention, caching, and speed. The full decision matrix for OOM (--novram / --cache-none / --disable-smart-memory), shared-VRAM creep on Windows (--reserve-vram N), model-switching with big text encoders (--cache-none), high-VRAM throughput (--gpu-only / --highvram), and attention-backend selection (--use-sage-attention for speed, --use-pytorch-cross-attention as the highest-quality / Z-Image-safe fallback). Also the acceleration-stack + Blackwell/RTX 5000 (sm_120) notes. Use when a graph OOMs (especially long video like LTX 2 / WAN), when the GPU spills into shared VRAM and slows to a crawl, when switching between models eats all RAM, when Z-Image produces black/garbled output under Sage, or when deciding which attention backend to launch with. Flag names verified against upstream comfy/cli_args.py; see Sources.

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Classes and statistical methods for large SNP association studies. This extends the earlier snpMatrix package, allowing for uncertainty in genotypes.

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Given a matrix of counts (e.g. from featureCounts) and optional information about the genes, this tool performs differential expression (DE) using the limma Bioconductor package and produces plots and tables useful in DE analysis. Interacti

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Dino normalizes single-cell, mRNA sequencing data to correct for technical variation, particularly sequencing depth, prior to downstream analysis. The approach produces a matrix of corrected expression for which the dependency between sequencing depth and the full distribution of normalized expression; many existing methods aim to remove only the dependency between sequencing depth and the mean of the normalized expression. This is particuarly useful in the context of highly sparse datasets such

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The cellxgene data portal (https://cellxgene.cziscience.com/) provides a graphical user interface to collections of single-cell sequence data processed in standard ways to 'count matrix' summaries. The cellxgenedp package provides an alternative, R-based inteface, allowind data discovery, viewing, and downloading.

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Fit linear models to overdispersed count data. The package can estimate the overdispersion and fit repeated models for matrix input. It is designed to handle large input datasets as they typically occur in single cell RNA-seq experiments.

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MSA2dist calculates pairwise distances between all sequences of a DNAStringSet or a AAStringSet using a custom score matrix and conducts codon based analysis. It uses scoring matrices to be used in these pairwise distance calcualtions which can be adapted to any scoring for DNA or AA characters. E.g. by using literal distances MSA2dist calculates pairwise IUPAC distances.

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TFBSTools is a package for the analysis and manipulation of transcription factor binding sites. It includes matrices conversion between Position Frequency Matirx (PFM), Position Weight Matirx (PWM) and Information Content Matrix (ICM). It c

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seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

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R generic interface to Hi-C contact matrices in `.(m)cool`, `.hic` or HiC-Pro derived formats, as well as other Hi-C processed file formats. Contact matrices can be partially parsed using a random access method, allowing a memory-efficient representation of Hi-C data in R. The `HiCExperiment` class stores the Hi-C contacts parsed from local contact matrix files. `HiCExperiment` instances can be further investigated in R using the `HiContacts` analysis package.

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Generate high-performing headline variations across different angles. Trigger on "headlines", "hooks", "ad copy", "email subject lines".

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Maintain package-level `agentmap.md` files as outline-level maps of the real file tree and core responsibilities. Use when package structure or responsibility boundaries change and the corresponding `agentmap.md` must be created or updated.

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Guides state management implementation using MobX + tsyringe. Triggered when handling data models, state logic, or Store architecture.

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Review uncommitted code changes to find unreasonable design, unfinished requirements, potential bugs, missed reuse opportunities, and optimization opportunities. Use when the user asks for a review of pending, uncommitted, or unpublished code changes and expects both findings and concrete improvements.

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Guides React component implementation, performance optimization, and state management thresholds. Triggered when handling components, pages, or UI logic.

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Interacts with local browser via Chrome DevTools Protocol (only triggered after user explicitly requests to inspect, debug, or interact with pages open in Chrome)

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Guides internationalization (i18n) implementation using i18next with TypeScript. Triggered when handling localization, translation files, or multilingual support.

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Guides using eRPC (electron-tRPC) for inter-process communication (IPC) between Electron main and renderer processes. Triggered when handling Electron IPC or tRPC-based systems.

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Specialized for translating document files and their content into English. Triggered when localization, translation, or converting Chinese documents to English is requested.

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Guides styling implementation using TailwindCSS + CSS Modules. Triggered when handling component styles, layout design, or CSS patterns.

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Guide for implementing TypeScript in projects, including naming conventions, type definitions, and code style. Triggered when writing or refactoring TypeScript code.

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Guides the generation, reading, and updating of agentmap.md files. This skill ensures a consistent and up-to-date codebase map for AI Agents.

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Called when users need to create new OpenCode skills. Automatically creates directory structure and writes SKILL.md files conforming to specifications.

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Design taste evaluation framework — DVF primary filter, Apple/Google/Jobs design principles as explicit scoring criteria, weighted decision matrix, and option ranking for the DIVERGE wave

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