「express」の検索結果

Use when filtering genes with high missingness and then imputing missing values in a bulk expression matrix with group-aware KNN through DMwR2, where donor samples are restricted by one annotation column before imputation. For strata with 10 or fewer samples, the script falls back to row-wise direct filling with mean or median. NOT for: single-cell data, multi-column stratification, non-tabular inputs, network access, or interactive workflows.

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Use when building a binary classification model from an expression matrix or other omics feature matrix with LASSO logistic regression, cross-validation, and coefficient path visualization. NOT for: multiclass classification, survival/Cox models, or ordinary linear regression.

日本語の概要は準備中です。原文の説明を表示しています。

Use when building a ceRNA regulatory network from a key gene list by combining bundled miRNA-mRNA and miRNA-lncRNA database files, with flat-file CSV exports and PDF visualization in a single output directory. NOT for: differential expression, single-cell analysis, enrichment analysis, or workflows without a key gene list.

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Run immune pathway GSVA or ssGSEA analysis from a bulk expression matrix, a sample group file, and a local immune Reactome gene-set table, then export differential pathway results and a heatmap for two-group comparison.

日本語の概要は準備中です。原文の説明を表示しています。

Use when estimating relative immune cell infiltration from a bulk expression matrix with a CIBERSORT-style nu-SVR deconvolution workflow based on an LM22 signature matrix, comparing one case group against one control group, and generating structured tables plus immune-fraction plots. NOT for single-cell RNA-seq, spatial data, clinical diagnosis, or workflows that require the original hosted CIBERSORT web service.

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Use when validating an existing prognostic risk signature on an external bulk expression cohort with survival outcomes, producing risk scores, Kaplan-Meier curves, risk distribution plots, heatmap, and time-dependent ROC curves. NOT for: model training, feature selection, nomogram construction, calibration analysis, or single-cell data.

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Use when performing GO and KEGG enrichment on a gene list from bulk RNA-seq or microarray studies, then generating a combined GO/KEGG dot chart. NOT for single-cell RNA-seq, methylation data, or non-expression data.

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Guide for writing idiomatic Scala when translating from Python. Use when the goal is not just syntactic translation but producing clean, idiomatic Scala code. Covers immutability, expression-based style, sealed hierarchies, and common Scala conventions.

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Decompose goals into MEOWs (Molecular Expressions of Work) - trackable atomic units following Gas Town's bead-based work model.

日本語の概要は準備中です。原文の説明を表示しています。

Integrate PayPal payment processing with support for express checkout, subscriptions, and refund management. Use when implementing PayPal payments, processing online transactions, or building e-commerce checkout flows.

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Build production-ready Node.js backend services with Express/Fastify, implementing middleware patterns, error handling, authentication, database integration, and API design best practices. Use when creating Node.js servers, REST APIs, GraphQL backends, or microservices architectures.

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ktx's semantic layer - a structured catalog of sources (tables/views), measures, joins, and segments expressed as YAML. Covers the schema and how to query it via `sl_query`. Use when the task involves querying pre-defined metrics (ARR, churn, retention, LTV, MAU) or reading SL source YAML to understand the catalog. Capture is handled by the `sl_capture` skill (memory-agent only).

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Analyze Gluten ANSI-mode test results (run dev/verify-ansi-expressions.sh, parse JSON tracker output, produce root-cause analysis and fix recommendations). Trigger on user requests like "analyze ANSI tests", "run ANSI matrix", "why is this ANSI test failing".

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Use when deploying an existing web application or API to an already-running Azure Kubernetes Service cluster. Detects the framework, generates a Dockerfile and Kubernetes manifests, validates against AKS Deployment Safeguards, and deploys with verification. WHEN: deploy app to AKS, deploy to existing AKS cluster, containerize app for Kubernetes, generate K8s manifests for Azure, set up CI/CD for AKS, my AKS deployment is failing safeguard checks, I have a Django/Express/Spring Boot app to run on AKS. DO NOT USE FOR: creating or provisioning an AKS cluster (use azure-kubernetes), assessing migration to AKS Automatic (use azure-kubernetes-automatic-readiness), or deploying to non-AKS targets like Web Apps, Container Apps, or Functions.

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Applies systematic tracing and isolation techniques to pinpoint exactly where a bug originates in code. Use when a bug is hard to locate, code is not working as expected, an error or crash appears with unclear cause, a regression was introduced between recent commits, or you need to narrow down which component, function, or line is faulty. Covers binary search debugging, git bisect for regressions, strategic logging with [TRACE] patterns, data and control flow tracing, component isolation, minimal reproduction cases, conditional breakpoints, and watch expressions across TypeScript, SQL, and bash.

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Test quality review drawing on twelve classic engineering books — with primary focus on xUnit Test Patterns, The Art of Unit Testing, How Google Tests Software, and Working Effectively with Legacy Code — that diagnoses structural problems in an existing test suite: brittleness, mock abuse, coverage illusions, slow execution, poor readability. Triggers when: user asks about test quality, shares test files for review, or expresses frustration: "tests keep breaking whenever I change anything", "our tests take forever", "tests pass but bugs still reach production", or "we have too many mocks". Do NOT trigger for: writing new tests from scratch (use the regular test-writing workflow) or testing framework/syntax questions — this skill reviews an existing suite for structural quality problems, not individual test authoring.

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Implement Google's Material Design 3 (Material You) UI system. Primary: Jetpack Compose Material3 (MaterialTheme, components, adaptive layout). Also Flutter and limited web (@material/web, maintenance mode). Covers tokens, 30+ components, layout, theming, M3 Expressive (platform matrix), and accessibility. Use when: "material design", "MD3", "material you", "Jetpack Compose", "MaterialTheme", "material component", "md3 button".

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Use when asked Temu 全托管还是半托管, TikTok Shop 怎么入驻, 亚马逊和 Temu 选哪个, 跨境电商平台怎么选, 产品出海要哪些认证, or choose and launch on cross-border marketplaces (Temu, TikTok Shop, Amazon, SHEIN, AliExpress). Produces a platform fit matrix for the seller's product and capacity, the operating model of each shortlisted platform (fully managed, semi-managed or self-operated), the compliance checklist by target market, a 90-day launch plan, and the questions to ask each platform's account manager. For the product listing copy itself, use cross-border-listing.

日本語の概要は準備中です。原文の説明を表示しています。

Backend architecture patterns, API design, database optimization, and server-side best practices for Node.js, Express, and Next.js API routes.

日本語の概要は準備中です。原文の説明を表示しています。

Use when reviewing a DataFusion Comet pull request. Covers the workflow that applies to every PR and routes to the area-specific review skills for expressions, FFI, memory management, shuffle, and Iceberg writes. Provides guidance to a human reviewer rather than posting comments.

日本語の概要は準備中です。原文の説明を表示しています。

Create a custom web dashboard (React + Vite + Express) inside your sandbox to visualize the agent's Turso database. The dashboard is served on port 3847 and the user sees it live in the "App" tab in Gooseworks. Use when the user asks for a dashboard, visualization, chart, metric view, or any custom UI powered by their agent's data.

日本語の概要は準備中です。原文の説明を表示しています。

Identify tumor neoantigens from somatic variants with pVACtools (pVACseq/pVACfuse/pVACbind/pVACvector/pVACview) for personalized cancer vaccines and checkpoint biomarkers. Encodes the field's hard truth that binding prediction is the easy, near-solved part and single-digit-percent PPV lives downstream — so it centers clonality/CCF, HLA LOH (the silent invalidator), expression, proximal-variant phasing, agretopicity/foreignness quality, and the predicted->presented->immunogenic validation tiers. Use when nominating vaccine targets, ranking neoantigens, or building a tumor-to-candidate pipeline. Binding details in mhc-binding-prediction; ranking in immunogenicity-scoring.

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Phases small variants, SVs, and methylation from Oxford Nanopore and PacBio long reads (read-backed/physical phasing) with WhatsHap, LongPhase, or HiPhase, and haplotags the BAM (HP/PS tags) for allele-resolved downstream analysis. Covers why phase blocks break at het-sparse gaps (read length x heterozygosity), why phasing the VCF is useless until the BAM is haplotagged, the GT-pipe/PS and read HP/PS tag spec, reporting block N50 with switch error, the diploid-assumption/CNV/haploid-region traps, trio phasing as the gold standard, and the boundary to statistical panel phasing. Use when phasing long-read variants, haplotagging reads for allele-specific methylation/expression or phased SVs, choosing WhatsHap vs LongPhase vs HiPhase, trio phasing, or assessing phasing quality.

日本語の概要は準備中です。原文の説明を表示しています。

Assign cell types from marker expression in IMC/MIBI data using clustering (PhenoGraph/FlowSOM/Leiden/Pixie), marker-based probabilistic classifiers (Astir), or image-context CNNs (CellSighter), covering the double-positive segmentation artifact, lineage-vs-state markers, the two spillover types, and why a "cell type" in imaging is conditioned on a segmentation guess. Use when phenotyping segmented IMC cells, choosing clustering vs classification, diagnosing implausible double-positive populations, separating lineage from functional markers, or transferring labels across a cohort.

日本語の概要は準備中です。原文の説明を表示しています。