Analyze PacBio Iso-Seq data for full-length isoform discovery and quantification. Use when characterizing transcript diversity or identifying novel splice variants.
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概要と使いどころ
Analyze PacBio Iso-Seq data for full-length isoform discovery and quantification. Use when characterizing transcript diversity or identifying novel splice variants.
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Analyze transcription factor motif accessibility variability using chromVAR. Use when identifying which TF motifs show variable accessibility across samples or conditions in ATAC-seq data.
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Detect transcription factor binding sites through footprinting analysis in ATAC-seq data using TOBIAS. Use when identifying TF occupancy patterns within accessible regions, as TF binding protects DNA from Tn5 cutting.
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De novo motif discovery and known motif enrichment analysis using HOMER and MEME-ChIP. Identify transcription factor binding motifs in ChIP-seq, ATAC-seq, or other genomic peak data. Use when finding enriched DNA motifs in peak sequences.
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ChIP-seq peak calling using MACS3 (or MACS2). Call narrow peaks for transcription factors or broad peaks for histone modifications. Supports input control, fragment size modeling, and various output formats including narrowPeak and broadPeak BED files. Use when calling peaks from ChIP-seq alignments.
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Identifies super-enhancers from H3K27ac ChIP-seq data using ROSE and related tools. Use when studying cell identity genes, cancer-associated regulatory elements, or master transcription factor binding regions that cluster into large enhancer domains.
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Provider-agnostic multi-LLM deliberation. Three phases — independent responses, cross-model anonymized ranking, chairman synthesis. Credentials come from explicit plugin configuration or pro-workflow-specific CLI variables. Persists transcript to a wiki page when --wiki <slug> is passed. Use when the user wants multiple AI perspectives, consensus-building, or the "LLM Council" approach for high-stakes reviews, plan critique, or contested learning rules.
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Turn one interview transcript into themes, supporting quotes, and action items. Use immediately after a session. For synthesising many sessions at once, use `affinity-diagram`.
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Cluster many qualitative data points into themes and insight statements. Use when synthesising across multiple sessions or sources. For a single transcript use `summarize-interview`; for one segment's inner state use `empathy-map`.
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Run a bounded AssemblyAI pre-recorded smoke test with explicit model fallback and safe output. Use when proving a new integration. Trigger with "AssemblyAI hello world", "first AssemblyAI transcript", or "AssemblyAI smoke test".
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Analyze and operate an AssemblyAI Streaming v3 session with safe tokens, audio framing, turn handling, and explicit termination. Use when building live captions or voice agents. Trigger with "AssemblyAI streaming", "AssemblyAI v3 WebSocket", or "live transcript".
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Produce a redacted AssemblyAI diagnostic bundle for support and incident triage. Use when evidence is needed without exposing keys, URLs, audio, transcripts, or prompts. Trigger with "AssemblyAI debug bundle" or "support evidence".
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Local speech-to-text transcription on Apple Silicon macOS. Supports wav directly and other audio formats via ffmpeg.
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Transform learning content (like YouTube transcripts, articles, tutorials) into actionable implementation plans using the Ship-Learn-Next framework. Use when user wants to turn advice, lessons, or educational content into concrete action steps, reps, or a learning quest.
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Create cross-platform agent skills from workflow descriptions. Activates when users ask to create an agent, automate a repetitive workflow, create a custom skill, or need advanced agent creation. Triggers on phrases like create agent for, automate workflow, create skill for, every day I have to, daily I need to, turn process into agent, need to automate, create a cross-platform skill, validate this skill, export this skill, migrate this skill, audit this skill, is this skill safe, vet a skill before installing, what does this skill access. Supports single skills, multi-agent suites, transcript processing, template-based creation, interactive configuration, cross-platform export, spec validation, and security auditing of third-party skills before install.
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Connect an MCP-capable coding agent to OpenChatCut and edit local video projects. Use when the user asks to install, connect, or set up OpenChatCut; inspect or edit an OpenChatCut project; work with its timeline, transcript, captions, media, generation, motion graphics, audio, color, or export tools; or recover from an OpenChatCut MCP error.
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Use for video editing or video creation work that should be editable in OpenChatCut, even when the user does not explicitly mention OpenChatCut. Covers local/attached video editing, captions/subtitles, transcription, trimming, talking-head cleanup, highlights, B-roll, overlays, generation, export, project/editor opening, importing, targeting, verifying, watching, and identifying the active OpenChatCut project/editor URL.
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Cut an imported livestream recording of any genre into evidence-backed, platform-ready clips by combining transcript, visual, audio, interaction, and domain-specific signals. Use for commerce, gaming, talk, interview, education, entertainment, sports, music, IRL, creative, news, or mixed livestream recordings.
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Summarize or extract text/transcripts from URLs, podcasts, and local files (great fallback for “transcribe this YouTube/video”).
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Process and generate multimedia content using Google Gemini API. Capabilities include analyze audio files (transcription with timestamps, summarization, speech understanding, music/sound analysis up to 9.5 hours), understand images (captioning, object detection, OCR, visual Q&A, segmentation), process videos (scene detection, Q&A, temporal analysis, YouTube URLs, up to 6 hours), extract from documents (PDF tables, forms, charts, diagrams, multi-page), generate images (text-to-image, editing, composition, refinement). Use when working with audio/video files, analyzing images or screenshots, processing PDF documents, extracting structured data from media, creating images from text prompts, or implementing multimodal AI features. Supports multiple models (Gemini 2.5/2.0) with context windows up to 2M tokens.
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Add file-based observability, tracing, and run analysis to LLM/agent experiments — per-turn transcripts, tool calls and results, reasoning traces, token/cost accounting, per-episode artifacts, plus terminal viewers and a run-comparison report. Platform-agnostic: one small adapter covers OpenAI, Gemini/Vertex, Anthropic, LiteLLM, Tinker, vLLM, or any custom inference stack, and the same tooling then works unchanged. Use this skill whenever the user wants observability, tracing, logging, or run tracking for model experiments; asks why an agent failed a task or wants to replay/debug/diff an episode; wants to compare models, arms, or ablations; wants to instrument a new folder, repo, or platform ("add observability here", "do the same for Tinker/Gemini/OpenAI"); wants to import or tie in existing experiment results so old runs show up alongside new ones; or wants eval runner scripts where many models share one protocol. Reach for this even when they only say "log what the model is doing", "I can't tell what happened in this run", or "set up traces for this experiment".
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Summarize or extract text/transcripts from URLs, podcasts, and local files (great fallback for “transcribe this YouTube/video”).
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Tencent Meeting MCP assistant for meeting lifecycle management. Create, modify, cancel meetings, track attendance, export recordings, query transcripts, and generate smart minutes. Use when user mentions online meetings, video conferencing, or Tencent Meeting operations.
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Summarize YouTube videos by extracting transcripts and generating structured notes. Use when the user wants to summarize a YouTube video, extract key points from a talk, create study notes from a lecture, or get timestamps for important moments. Supports multiple URL formats and languages.
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