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概要と使いどころ
EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. Thi
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A parser for mzIdentML files implemented using the XML package. The parser tries to be general and able to handle all types of mzIdentML files with the drawback of having less 'pretty' output than a vendor specific parser. Please contact th
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Microbiome time series simulation with generalized Lotka-Volterra model, Self-Organized Instability (SOI), and other models. Hubbell's Neutral model is used to determine the abundance matrix. The resulting abundance matrix is applied to (Tree)SummarizedExperiment objects.
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The ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose
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Universal LaTeX document skill: create, compile, and convert any document to professional PDF with PNG previews. Supports resumes, reports, cover letters, invoices, academic papers, theses/dissertations, academic CVs, presentations (Beamer), scientific posters, formal letters, exams/quizzes, books, cheat sheets, reference cards, exam formula sheets, fillable PDF forms (hyperref form fields), conditional content (etoolbox toggles), mail merge from CSV/JSON (Jinja2 templates), version diffing (latexdiff), charts (pgfplots + matplotlib), tables (booktabs + CSV import), images (TikZ), Mermaid diagrams, AI-generated images, watermarks, landscape pages, bibliography/citations (BibTeX/biblatex), multi-language/CJK (auto XeLaTeX), algorithms/pseudocode, colored boxes (tcolorbox), SI units (siunitx), Pandoc format conversion (Markdown/DOCX/HTML ↔ LaTeX), and PDF-to-LaTeX conversion of handwritten or printed documents (math, business, legal, general). Compile script supports pdflatex, xelatex, lualatex with auto-detection, latexmk backend, texfot log filtering, PDF/A output, and verbosity control (--verbose/--quiet). Empirically optimized scaling: single agent 1-10 pages, split 11-20, batch-7 pipeline 21+. Use when user asks to: (1) create a resume/CV/cover letter, (2) write a LaTeX document, (3) create PDF with tables/charts/images, (4) compile a .tex file, (5) make a report/invoice/presentation, (6) anything involving LaTeX or pdflatex, (7) convert/OCR a PDF to LaTeX, (8) convert handwritten notes, (9) create charts/graphs/diagrams, (10) create slides, (11) write a thesis or dissertation, (12) create an academic CV, (13) create a poster, (14) create an exam/quiz, (15) create a book, (16) convert between document formats (Markdown, DOCX, HTML to/from LaTeX), (17) generate Mermaid diagrams for LaTeX, (18) create a formal business letter, (19) create a cheat sheet or reference card, (20) create an exam formula sheet or crib sheet, (21) condense lecture notes/PDFs into a cheat sheet, (22) create a fillable PDF form with text fields/checkboxes/dropdowns, (23) create a document with conditional content/toggles (show/hide sections), (24) generate batch/mail-merge documents from CSV/JSON data, (25) create a version diff PDF (latexdiff) highlighting changes between documents, (26) create a homework or assignment submission with problems and solutions, (27) create a lab report with data tables, graphs, and error analysis, (28) encrypt or password-protect a PDF, (29) merge multiple PDFs into one, (30) optimize/compress a PDF for web or email, (31) lint or check a LaTeX document for common issues, (32) count words in a LaTeX document, (33) analyze document statistics (figures, tables, citations), (34) fetch BibTeX from a DOI, (35) convert a Graphviz .dot file to PDF/PNG, (36) convert a PlantUML .puml file to PDF/PNG, (37) create a one-pager/fact sheet/executive summary, (38) create a datasheet or product specification sheet, (39) extract pages from a PDF (page ranges, odd/even), (40) check LaTeX package availability before compiling, (41) analyze citations and cross-reference with .bib files, (42) debug LaTeX compilation errors, (43) make a document accessible (PDF/A, tagged PDF), (44) create lecture notes or course handouts, (45) fill an existing PDF form (fillable fields or non-fillable with annotations), (46) extract text or tables from a PDF (pdfplumber, pypdf), (47) OCR a scanned PDF to text (pytesseract), (48) create a PDF programmatically with reportlab (Canvas, Platypus), (49) rotate or crop PDF pages (pypdf), (50) add a watermark to an existing PDF, (51) extract metadata from a PDF (title, author, subject).
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Comprehensive product research and opportunity analysis for Amazon sellers. Analyzes demand, competition, profit potential, market entry barriers, and validates product ideas. Covers product sourcing, pricing strategy, and go-to-market planning. Use when the user asks about researching a product to sell, validating product ideas, product opportunity analysis, market research for Amazon, competition analysis, profit potential, should I sell this product, product viability, or any general product research questions.
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Build and maintain a Karpathy-style LLM knowledge base — a self-compiling Obsidian markdown wiki where an Agent ingests raw sources, compiles cross-linked concept/entity/summary pages, answers queries against the corpus, lints the graph for health, and audits in-context human feedback filed from Obsidian or the local web viewer. Use when (1) scaffolding a new knowledge base for any research topic, (2) ingesting articles/papers/PDFs/web pages into raw/, (3) compiling or restructuring wiki articles from existing raw material, (4) answering questions against the wiki and filing durable answers back, (5) running lint passes for dead links / orphan pages / coverage gaps / audit shape, (6) processing human feedback from the audit/ directory and applying corrections. Not for general note-taking, daily journals, or non-wiki Obsidian use.
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Use this skill whenever the user wants to create, read, edit, or manipulate Word documents (.docx files). Triggers include: any mention of 'Word doc', 'word document', '.docx', or requests to produce professional documents with formatting like tables of contents, headings, page numbers, or letterheads. Also use when extracting or reorganizing content from .docx files, inserting or replacing images in documents, performing find-and-replace in Word files, working with tracked changes or comments, or converting content into a polished Word document. If the user asks for a 'report', 'memo', 'letter', 'template', or similar deliverable as a Word or .docx file, use this skill. Do NOT use for PDFs, spreadsheets, Google Docs, or general coding tasks unrelated to document generation.
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Use when the user explicitly asks to port, convert or migrate a Remotion source to HyperFrames HTML: one-way, Remotion-only. A passing mention or a lookalike request is a fresh build (/general-video); unclear intent goes to /hyperframes.
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Use when a HyperFrames composition needs seek-safe 2D/3D keyframes, GSAP timelines, CSS keyframes, Anime.js, WAAPI, FLIP, paths, masks, SVG morph/draw, text trails, 3D depth, or `hyperframes keyframes` diagnostics. Don't use for broad scene strategy, brand design, media sourcing, captions, or general video planning.
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Author or edit a custom HyperFrames composition when no specialized workflow fits, or when BRIEF.md sets flow: companion. Use for longer or multi-scene pieces, brand and sizzle reels, montages, static loops, static title cards, footage remixes, and freeform builds. Use motion-graphics instead for a short unnarrated motion-first unit, including an animated title. Route fresh creation through hyperframes before using this skill.
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Use when the user wants a short, design-led, unnarrated motion graphic: kinetic type, stat count-up, chart hit, logo sting, lower-third, animated map, or UI animation. Longer or narrated: /general-video. Unclear: /hyperframes.
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Maintain Operately translations when adding or changing user-visible copy, fixing missing translations, or adding a supported language. Covers shared Gettext/i18next catalogs, glossaries, generation, and completeness checks; excludes translating user-authored content or general prose outside the product.
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Core Kotlin patterns for scope functions, backing properties, and read-only collection interfaces. Use for let/apply/run/also/with choices or encapsulating mutable state; defer general language constructs, extension functions, coroutines/runCatching, Android/Room recipes, and testing/tooling setup.
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Organize Android strings, drawables, fonts, themes, localization, and concrete resource-backed Compose values such as MaterialTheme colors. Use for resource declarations and their direct UI lookup; defer design-system token architecture, network image loading, lint-rule configuration, and general Compose implementation.
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Long-running iterative cycle — one entry, seven modes (debug|improve|planex|review|security|defensive|ui). Shared archaeology/audit → fix → verify → generalize → discover → persist skeleton with mode-specific dimensions. User-invoked campaign entry; single-step fixes route via /maestro-next
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Use when the user asks to review or clean up R code for tidyverse style, standardize formatting or names, remove redundant comments or wrappers, or make a behavior-preserving style pass. Also use when writing substantial new R package code if the user requests tidyverse style or the package already follows it. Not for routine small edits or general correctness, security, or test-quality reviews.
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Use when the user is explicitly working with Quarto, .qmd files, _quarto.yml, Quarto projects, or Quarto features such as callouts, cross-references, citations, Mermaid diagrams, extensions, websites, books, presentations, and reports. Also use for explicit migration from or comparison with R Markdown, bookdown, blogdown, xaringan, distill, or Jupyter notebooks to Quarto. Do not use for general R Markdown or related-format questions unless Quarto or migration to Quarto is explicitly mentioned.
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Create a repository-grounded AppSec threat model covering assets, trust boundaries, attackers, abuse paths, and mitigations. Use only for explicit threat-modeling requests, not general architecture or code review.
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Implement or debug Hugging Face Spaces ZeroGPU code using `@spaces.GPU`, including isolation, state, duration, sizing, and CUDA-wheel constraints. Use for ZeroGPU-specific behavior; use huggingface-spaces for general hosting.
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Build and publish a Gradio Hugging Face Space for a user-provided image or video LoRA, including pipeline selection and model-card settings. Use for LoRA demos; use huggingface-spaces for general Space work.
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Identify error-prone APIs, dangerous configuration, and footgun designs that enable security mistakes. Use for API ergonomics, misuse resistance, secure defaults, or pit-of-success reviews; use code-review for general defects.
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Audit GitHub Actions that run AI agents for prompt injection, unsafe interpolation, sandbox gaps, and permissive actor rules. Use for agentic CI workflows, not general application code review.
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Create an isolated Python environment with a compatible Python version and boto3 for SageMaker or AWS automation. Use before executing AWS Python code; do not use for general Python environment setup.
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