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概要と使いどころ
Use when auditing article or blog pages for date markup, generating Article JSON-LD with datePublished/dateModified, or checking whether a CMS template surfaces dates correctly.
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Verify implementation matches OpenSpec change artifacts. Use when the user wants to validate that implementation is complete, correct, and coherent before archiving. Also use when the user says "openspec verify" or "opsx verify".
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Source-control safety for Git. Two rules apply whether or not you read the body. First, never commit, amend, push, tag, rebase, cherry-pick, revert, or reset --hard unless the user asked for that exact write in this session. An explicit request to create a new commit counts anywhere in the user's own task text, but it is not a request to amend, push, or tag. Finishing a task without that request is not authorization, so leave your work uncommitted for review. Second, when a Git lock file or corrupt index blocks you, never kill the holding process or bulldoze through with deletions - wait, retry, use the holder's own stop mechanism, or stop and report. Load the body only before writing Git history or recovering Git state.
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Read or triage email, clean up an inbox, draft or send messages, and check delivery. Use for the user's connected mailbox or your own email, including questions about its availability; choose the correct sender and follow the confirmation policy.
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Reconcile new evidence into existing ChatGPT Pages or a Space when the user requests upkeep. For a direct text correction, use write-page. Do not use for ordinary chat drafts, writing, or advice, or treat a selected Page as a request to save. Schedule future upkeep only when requested.
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Review the current diff, or a PR number/branch/path target, for correctness bugs (plus reuse/simplification/efficiency cleanups where the model's review recipe covers them) at the given effort level (low|medium|high|xhigh|max: from few high-confidence findings up to many, some of them uncertain; ultra: deep multi-agent review in the cloud); with no level given, it reuses the level you typed last. Pass --comment to post findings as inline PR comments, or --fix to apply the findings to the working tree after the review. Pass --max-findings <n> to report up to n findings, or --max-findings all for every finding. The choice stays until you pass --max-findings default. For ultra on a GitHub.com PR target, --post asks to post the finished review’s findings to the PR as a single comment from the user’s GitHub account (not a review; the launch dialog still confirms in interactive sessions, while non-interactive mode posts on the flag alone) and --no-post hides that option.
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Evaluate an Agent Skill bundle for structural integrity, trigger quality, artifact improvement, script correctness, safety, installed-tree integrity, and target-host portability before release.
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Review or correct a Remotion pull request title
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12-agent academic paper writing pipeline. 11 modes (full/plan/outline/revision/revision-coach/abstract/lit-review/format-convert/citation-check/disclosure/rebuttal-audit). 6 paper types, 5 citation formats, bilingual abstracts, LaTeX/DOCX-via-Pandoc/PDF output. Style Calibration + Writing Quality Check + Anti-Patterns with IRON RULE markers. Triggers: write paper, academic paper, guide my paper, parse reviews, I got reviewer comments, revision roadmap, should we push back, conference rebuttal, grant panel response, audit my rebuttal, check my response draft, AI disclosure, check citations, citation check, check my references, verify references, look over the refs, 寫論文, 學術論文, 引導我寫論文, 審查意見, 我收到審查意見, 修訂路線圖, 評估回覆, 檢查引用, 引用檢查, 檢查參考文獻, 核對文獻, 논문 작성, 초록 작성, 논문 수정, 논문 계획을 도와줘, 심사 의견을 받았어, 심사 의견 반영, 답변서 점검, AI 사용 고지, 인용 확인, 인용 형식 검사, enmendar mi artículo, redactar artículo, guía mi artículo, analizar reseñas, auditar mi respuesta, verificar borrador de respuesta, verificar citas, divulgación de IA.
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Calculates sample sizes and statistical power for study planning. Applies when someone asks "how many subjects/samples/replicates do I need", wants an a priori power analysis, a minimum detectable effect (MDE), a power curve, or needs to justify a sample size for a grant, IRB protocol, or pre-registration. Covers closed-form power for t-tests, ANOVA, proportions, correlations, chi-square, and regression, plus simulation-based (Monte Carlo) power for complex designs — logistic/Poisson regression, mixed models, cluster-randomized trials, survival, and interactions. Also handles requests that only mention an effect size, alpha, or "80% power" without saying "power analysis" explicitly. For laying out the study (randomization, blocking, factorial/DOE, crossover, sequential designs) use experimental-design; for analyzing data already collected and reporting it use statistical-analysis.
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Guided statistical analysis for research data - test selection, assumption checking, effect sizes, power analysis, Bayesian alternatives, and APA-formatted reporting. Use whenever a user wants to compare groups, test a hypothesis, analyze experimental or survey data, check statistical assumptions, compute required sample sizes, or write up results - even if they never name a specific test. Covers t-tests, ANOVA, chi-square, correlation, regression, non-parametric and Bayesian methods. For low-level model APIs, see the statsmodels and pymc skills.
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Validates and executes RELION single-particle cryo-EM refinement and half-map postprocessing. Supports STAR optics/acquisition checks, particle-stack consistency, gold-standard half sets, soft-mask validation, diagnostic Fourier shell correlation, and restart guidance.
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Performs bulk RNA-seq differential expression analysis with PyDESeq2, including count validation, formula designs, explicit contrasts, Wald tests, FDR correction, coefficient-matched LFC shrinkage, and result visualization. Use for PyDESeq2 or Python DESeq2 workflows with biological replicates.
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Performs pathway and gene-set enrichment analysis on gene lists or ranked gene data and interprets the results. Used when the user has a set of genes (differentially expressed genes from PyDESeq2/Scanpy, CRISPR-screen hits, cluster marker genes, proteomics hits) and wants to know which biological pathways, GO terms, or gene sets are over-represented or enriched. Covers over-representation analysis (ORA / Enrichr / Fisher / hypergeometric), ranked Gene Set Enrichment Analysis (GSEA / preranked), single-sample scoring (ssGSEA/GSVA), and functional profiling via gseapy, g:Profiler, Enrichr libraries, MSigDB, GO, KEGG, Reactome, and WikiPathways — plus gene-ID mapping, choosing the right background universe, multiple-testing correction, redundancy reduction, dotplots/enrichment maps, and publication-ready tables. Use this for "pathway analysis", "enrichment analysis", "GO enrichment", "KEGG/Reactome pathways", "GSEA", "over-representation", "functional annotation", or "what pathways are my genes in".
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GPU-accelerates scientific Python on NVIDIA hardware and verifies that the result is correct and faster. Use for CUDA/GPU optimization; CPU-bound NumPy, SciPy, pandas, scikit-learn, NetworkX, scikit-image, vector-search, image-processing, graph, simulation, or file-I/O workloads; CuPy, cuDF, cuML, cuGraph, cuVS, cuCIM, KvikIO, Warp, Newton, Numba-CUDA, or RAFT questions; and profiling, memory-transfer, kernel, or multi-GPU bottlenecks. Also use when large data-parallel Python code is slow and GPU acceleration is a plausible option, even if the user does not name CUDA.
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Processes calibrated one-dimensional complex NMR free-induction decays with nmrglue into phased spectra, peak candidates, and signed integration regions. Use for raw 1D NMR processing, ppm-axis verification, apodization, Fourier transformation, manual phasing, baseline correction, or reproducible spectral integration.
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Analyzes Neuropixels extracellular recordings end-to-end with SpikeInterface. Covers loading SpikeGLX/Open Ephys/NWB data, preprocessing, drift/motion correction, Kilosort4 (and CPU) spike sorting, quality metrics, and unit curation (threshold-based, model-based UnitRefine, and AI-assisted visual review). Use when working with Neuropixels 1.0/2.0 recordings, spike sorting, or extracellular electrophysiology analysis.
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Performs Particle Image Velocimetry (PIV) analysis with OpenPIV. Use when extracting velocity fields from PIV image pairs, analyzing fluid dynamics or flow visualization experiments, cross-correlating interrogation windows, validating and replacing spurious PIV vectors, or computing vorticity, strain rate, and turbulence statistics from measured velocity fields.
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Solves seawater carbonate chemistry with PyCO2SYS for chemical oceanography, ocean acidification, and marine carbon-cycle research. Use for paired total alkalinity, dissolved inorganic carbon, pH, or seawater pCO2/fCO2 measurements; carbonate speciation; aragonite and calcite saturation; Revelle factors; lab-to-in-situ temperature and pressure corrections; and measurement uncertainty propagation. Applies to carbonate-system calculations, not general aqueous speciation or air-sea gas-flux estimation.
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NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.
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Converts genomic intervals between coordinate conventions, normalises and compares variant representations, and detects assembly or contig-naming mismatches before they corrupt an analysis. Used whenever coordinates cross a format, tool, or assembly boundary - converting between BED, GFF/GTF, VCF, SAM/BAM, WIG, PSL, genePred, Picard interval_list, or region strings; reconciling 0-based half-open with 1-based inclusive; left-aligning or trimming indels; checking whether two variant records describe the same change; mapping genomic to transcript, CDS, or protein positions; auditing a BED/GTF/VCF for convention violations; or diagnosing GRCh37 vs hg19 vs GRCh38 vs T2T, chr-prefix, and liftover problems. Triggers include "off by one", "0-based", "1-based", "half-open", "coordinate system", "left-align", "normalize variant", "bcftools norm", "chr prefix", "wrong genome build", "liftover", "REF mismatch", and "HGVS".
日本語の概要は準備中です。原文の説明を表示しています。
Draft or restructure scientific manuscript arguments, sections, and initial-submission materials from author-provided evidence. Use for 论文写作、章节起草、论证重构、正文压缩、首次投稿材料. Use nature-polishing for language-only edits to existing prose and nature-response for post-decision correspondence.
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How to use the PSL syntax tree layers (green tree, red tree, strongly-typed AST classes) correctly. Use for any PSL-related work: PSL interpreters (contract-psl), helpers inside the psl-parser package, the language server, formatters, or anything else that consumes `parse()` output from @internal/psl-parser.
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Autonomous agents are AI systems that can independently decompose goals, plan actions, execute tools, and self-correct without constant human guidance. The challenge isn't making them capable - it's making them reliable. Every extra decision multiplies failure probability.
日本語の概要は準備中です。原文の説明を表示しています。