264 件 ・ 関連度順
概要と使いどころ
Parse all `# implements:` annotations in source code and emit `library/_code-index.md` as a shelf-index. Also extracts cross-module import edges and writes `library/_dependency-edges.md`. Idempotent — re-running produces byte-identical output if no annotations or imports changed.
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Add PUT workflow annotations to source files using the correct language-specific comment prefix. Covers annotation syntax, skeleton generation via put_generate(), multiline annotations, .internal variables, and validation. Supports 30+ languages with automatic comment prefix detection. Use after analyzing a codebase and having an annotation plan, when adding workflow documentation to new or existing source files, or when documenting data pipelines, ETL processes, or multi-step computations.
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Use this agent when you need to perform custom bioinformatics analyses on genes or proteins that go beyond standard database lookups. This includes situations where existing domain/family annotations from UniProt are insufficient, when you need to verify dubious annotations, or when you need to perform comparative analyses across gene sets. The agent creates reproducible analysis pipelines with proper dependency management and documentation.
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Query the Ensembl REST API for regulatory feature annotations, variant effect prediction (VEP), coordinate liftover, gene lookups, and cross-references. Use when the user needs to annotate variants with VEP (consequence, CADD, REVEL, SpliceAI), check Ensembl Regulatory Build overlap for ENCODE regions, convert coordinates between GRCh37 and GRCh38, resolve gene IDs (Ensembl ↔ symbol ↔ RefSeq), look up gene phenotype associations, or cross-reference ENCODE targets with Ensembl annotations. Also use when the user mentions Ensembl, VEP, variant effect predictor, liftover, assembly conversion, regulatory build, gene lookup, or cross-references between databases.
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Query the UCSC Genome Browser REST API to retrieve regulatory tracks, DNA sequences, cCRE annotations, TF binding clusters, and track schemas for any genomic region. Use when the user wants to look up what regulatory elements exist at a genomic locus, retrieve DNA sequence under peaks, query ENCODE cCREs or TF rPeak clusters from UCSC, check what tracks are available for a genome assembly, get chromatin accessibility across cell types, or cross-reference ENCODE data with UCSC-hosted annotations. Also use when the user mentions UCSC, genome browser, cCRE lookup, SCREEN, TF binding clusters, DNA sequence retrieval, or track data extraction.
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Add p-value brackets, significance asterisks, and effect-size annotations to distribution plots using ggpubr, ggsignif, and statannotations with correct test selection (parametric vs non-parametric vs paired), multiple-testing adjustment, and rendering of negative results. Use when a boxplot/violin/raincloud needs in-figure statistical comparisons between groups.
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METAINFORMANT rules for directory src/metainformant/pharmacogenomics/annotations. Use when editing, adding tests, or reviewing code under this path. Read the linked AGENTS.md first; use uv only, write outputs to output/, real implementations.
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Implements type-safe Flutter routing using AutoRoute v11 with code generation and @RoutePage annotations. Activates when setting up AutoRoute navigation, configuring AutoRouterConfig or RootStackRouter, generating route files with build_runner, using @RoutePage, @PathParam, or @QueryParam annotations, implementing AutoTabsRouter for bottom navigation tabs, adding navigation guards with AutoRouteGuard, setting up nested or child routes, handling type-safe route parameters, or migrating from string-based Navigator routing to compile-time-verified routes. Ideal for large apps requiring refactoring confidence and zero string-based routing errors.
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This skill should be used when the user asks how to "use VibeTags", "add VibeTags annotations", "set up AI guardrails", "protect code from AI", "configure AI platforms", asks about @AILocked, @AIContext, @AIDraft, @AIAudit, @AIIgnore, @AIPrivacy, @AICore, @AIPerformance, @AIContract, @AITestDriven, @AIThreadSafe, @AIImmutable, @AIDeprecated, @AIObservability, @AIRegulation, @AIArchitecture, @AILegacyBridge, @AIStrictClasspath, @AIInternationalized, @AIPublicAPI, @AISchemaSafe, @AIStrictExceptions, @AIStrictTypes, @AIParallelTests, @AIIdempotent, @AIFeatureFlag, @AISecure, @AICallersOnly, @AISandboxOnly, @AIMemoryBudget, @AIPure, @AIDomainModel, @AIExtensible, @AIInputSanitized, @AISecureLogging, @AIExplain, @AIPrototype, @AISunset, @AITemporary annotations, or wants to control how AI tools interact with Java code.
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Transfers gene annotations between genome assemblies via coordinate liftover (UCSC liftOver, CrossMap for same-species version updates) or feature/sequence projection (Liftoff for same/close species, miniprot for protein-level cross-species, TOGA/GeMoMa/CAT for distant clades). Covers the coordinate-vs-projection decision by divergence, why a successful lift is not biological confirmation, reference bias, the silent-dropping of unmapped features, build/PAR/MHC/inversion hazards, and transfer-vs-de-novo validation. Use when annotating a new assembly of a species with an existing reference, harmonizing coordinates across builds, or mapping annotations across related species.
日本語の概要は準備中です。原文の説明を表示しています。
Add p-value brackets, significance asterisks, and effect-size annotations to distribution plots using ggpubr, ggsignif, and statannotations with correct test selection (parametric vs non-parametric vs paired), multiple-testing adjustment, and rendering of negative results. Use when a boxplot/violin/raincloud needs in-figure statistical comparisons between groups.
日本語の概要は準備中です。原文の説明を表示しています。
Transfers gene annotations between genome assemblies via coordinate liftover (UCSC liftOver, CrossMap for same-species version updates) or feature/sequence projection (Liftoff for same/close species, miniprot for protein-level cross-species, TOGA/GeMoMa/CAT for distant clades). Covers the coordinate-vs-projection decision by divergence, why a successful lift is not biological confirmation, reference bias, the silent-dropping of unmapped features, build/PAR/MHC/inversion hazards, and transfer-vs-de-novo validation. Use when annotating a new assembly of a species with an existing reference, harmonizing coordinates across builds, or mapping annotations across related species.
日本語の概要は準備中です。原文の説明を表示しています。
Add p-value brackets, significance asterisks, and effect-size annotations to distribution plots using ggpubr, ggsignif, and statannotations with correct test selection (parametric vs non-parametric vs paired), multiple-testing adjustment, and rendering of negative results. Use when a boxplot/violin/raincloud needs in-figure statistical comparisons between groups.
日本語の概要は準備中です。原文の説明を表示しています。
Use this skill when a driver needs to edit their own ELD record. Covers what edits are allowed, what edits trigger annotations, the unassigned-driving-time procedure, and when carriers must accept or reject driver edits.
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Analyze development-set disagreements between human annotations and one Coval text LLM judge, then propose a focused prompt revision. Use coval-calibrate-metric for independent trust measurements.
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INVOKE THIS SKILL when creating, managing, or using annotation configs on Arize (categorical, continuous, freeform), or applying human annotations to project spans via the Python SDK. Configs are the label schema for human feedback on spans and other surfaces in the Arize UI. Triggers: annotation config, label schema, human feedback schema, bulk annotate spans, update_annotations.
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Complete guide for AutoFixture advanced customization techniques. Use when you need to customize AutoFixture builders or handle special type test data generation rules. Covers DataAnnotations automatic integration, ISpecimenBuilder implementation, priority management. Includes DateTime/numeric range builders, generic design, and fluent extension methods. Keywords: autofixture customization, autofixture customize, autofixture customization, specimen builder, ISpecimenBuilder, RandomDateTimeSequenceGenerator, NumericRangeBuilder, DataAnnotations autofixture, fixture.Customizations, Insert(0), custom builder, NoSpecimen, generic builder
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A crisp greybox / blueprint lo-fi wireframe — neutral grey blocks on a pale page, image placeholders drawn as a rectangle with a diagonal X, text shown as solid "lorem bars" of varying widths, sharp 1.5–2px borders, and a single monospace redline accent for annotations. Reads like a structural blueprint before any visual design is applied. Use when the brief asks for "greybox", "blueprint wireframe", "lo-fi dashboard", "low fidelity", "线框图", or "灰盒原型".
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A hand-drawn wireframe exploration — graph-paper background, marker / pencil tone, multiple tab labels for variants, sticky-note annotations, scribbled chart placeholders, hatched fills. Reads like a designer's whiteboard before any pixels are committed. Use when the brief asks for "wireframe", "sketch wireframe", "hand-drawn", "lo-fi", "whiteboard", "草稿", or "手绘原型".
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Command-line interface for Openscreen — a screen recording editor. A stateful CLI for editing screen recordings with zoom, speed ramps, trim, crop, annotations, and polished exports. Built on the Openscreen JSON project format with ffmpeg as the rendering backend. Designed for AI agents and power users who need programmatic video editing.
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Queries the 1000 Genomes Project dataset (3,202 whole-genome-sequenced individuals, GRCh38) at the level of individual participants. Use when a question is about individuals or variants in the 1000 Genomes Project cohort: which individuals carry variants matching specific criteria in a gene or region, which individuals are homozygous-reference at a position, which variants exist in the dataset or carried by specified individuals in a gene or region, the relatedness between two specified individuals. Variants are returned with 1000 Genomes allele frequencies (AF), gnomAD v4.1 exome and genome AF, AlphaMissense score, and HGVSp annotations.
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Searches 18 scholarly APIs for papers, preprints, citations, open-access full text, repository records, and journal OA status, and returns results with reproducible provenance. Covers PubMed, PMC, Europe PMC, bioRxiv, medRxiv, arXiv, OpenAlex, Crossref, Semantic Scholar, CORE, Unpaywall, OpenCitations, PubTator3, Zenodo, Figshare, ROR, BioStudies, and DOAJ. Use when searching for papers, citations, DOI/PMID/arXiv lookups, abstracts, full text, open-access PDFs, preprints, citation graphs, author publications, biomedical entity annotations, deposited records (Zenodo, Figshare, BioStudies), institution ROR IDs, or any scholarly literature query. Triggers on mentions of any supported database or requests like "find papers on X", "look up this DOI", "who cites this paper", or "get me the PDF".
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Inspects and automates microscopy data workflows against OMERO.server with omero-py, BlitzGateway, OMERO CLI, tables, annotations, ROIs, rendering, and documented OMERO.web APIs. Use this skill for scoped OMERO inventory, metadata export, import/export planning, or reviewed write workflows.
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Queries 20+ bioinformatics resources through CLI/Python. Supports quick lookups of gene info, BLAST/BLAT, viral sequence downloads, PDB/mmCIF structures, G2P residue annotations, enrichment analysis, OpenTargets, COSMIC, CELLxGENE, and 8cube mouse specificity/expression data. Best for interactive exploration and simple queries. For batch processing or advanced BLAST use biopython; for multi-database Python workflows use bioservices.
日本語の概要は準備中です。原文の説明を表示しています。