「anp」の検索結果

Queries the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need population-scale cell metadata, gene expression slices, Census summary counts, source H5AD URIs/downloads, embeddings, spatial Census data, or reference atlas comparisons across organisms, tissues, diseases, assays, and cell types. For analyzing your own local single-cell data use scanpy, anndata, or scvi-tools.

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Prepares bulk RNA-seq FASTQ, Salmon, STAR or featureCounts output for gene-level differential expression. Covers nf-core/rnaseq and standalone quantification, biological replication, strandedness, reference provenance, validated count assembly and a PyDESeq2 handoff. Use for FASTQ-to-counts analysis, nf-core/rnaseq configuration, STAR/Salmon quantification, or building a counts matrix for DESeq2. For single-cell data use scanpy; for statistical fitting alone use pydeseq2.

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Use when the user wants to know what will break if they change something, or needs safety analysis before editing code. Examples: "Is it safe to change X?", "What depends on this?", "What will break?"

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Use when the user asks how code works, wants to understand architecture, trace execution flows, or explore unfamiliar parts of the codebase. Examples: "How does X work?", "What calls this function?", "Show me the auth flow"

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Use when the user needs to run GitNexus CLI commands like analyze/index a repo, check status, clean the index, generate a wiki, or list indexed repos. Examples: "Index this repo", "Reanalyze the codebase", "Generate a wiki"

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Use when working on, reviewing, or extending GitNexus's CFG/taint/PDG subsystem (the `--pdg` layers), or when reasoning about source→sink data-flow findings. Examples: "How does taint analysis work here?", "Why didn't explain find this flow?", "Add a new sink/source", "Review the interprocedural taint code".

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Use when the user is debugging a bug, tracing an error, or asking why something fails. Examples: "Why is X failing?", "Where does this error come from?", "Trace this bug"

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Use when you need a deep, implementation-ready engineering plan for a code change — built from GitNexus graph intelligence, statement-level PDG analysis, and targeted source verification, compact enough that an implementation agent can start without re-investigating. Also strengthens existing plans via Deepen mode. Examples: "/gitnexus-plan Add retry support to the ingestion pipeline", "/gitnexus-plan deepen docs/plans/<plan>.md", "plan this change using the knowledge graph".

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Use when the user wants the GitNexus engineering pipeline run end-to-end on a task: gitnexus-plan (plan depth chosen up front), a blocking gate to execute with gitnexus-work or stop, finishing with a gitnexus-review of the result. Examples: "/gitnexus-lfg Add retry support to the ingestion pipeline", "run the gitnexus pipeline on this", "plan, build and review this feature".

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Use when executing an engineering plan produced by gitnexus-plan (or a small bounded task directly) — implements step by step with GitNexus impact checks before every symbol edit, tests from the plan's scenarios, and detect_changes gating every commit. Examples: "/gitnexus-work docs/plans/2026-07-11-gitnexus-plan-ingestion-retry.md", "/gitnexus-work" (latest plan), "execute the plan".

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Review code changes with GitNexus from a GitHub PR URL or number, a branch/ref or commit range, or local staged, unstaged, and untracked changes. Use when the user asks for a code review, merge-risk assessment, regression hunt, missing-test analysis, or a verdict on whether a PR, branch, commit range, or local diff is safe.

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Use when querying or extending GitNexus's PDG control/data-dependence surface (the `pdg_query` MCP tool, CDG/REACHING_DEF edges), or reasoning about "what controls X" / "where does Y flow" / guard clauses. Examples: "what guards this statement?", "trace this variable within the function", "why is the pdg_query result empty?", "add a CDG query".

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Use when the user wants to rename, extract, split, move, or restructure code safely. Examples: "Rename this function", "Extract this into a module", "Refactor this class", "Move this to a separate file"

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Use when the user asks about GitNexus itself — available tools, how to query the knowledge graph, MCP resources, graph schema, or workflow reference. Examples: "What GitNexus tools are available?", "How do I use GitNexus?"

日本語の概要は準備中です。原文の説明を表示しています。

Run a GitNexus production-readiness pull request review using a coordinated reviewer swarm.

日本語の概要は準備中です。原文の説明を表示しています。

Performs quality control on single-cell RNA-seq data (.h5ad or .h5 files) using scverse best practices with MAD-based filtering and comprehensive visualizations. Use when users request QC analysis, filtering low-quality cells, assessing data quality, or following scverse/scanpy best practices for single-cell analysis.

日本語の概要は準備中です。原文の説明を表示しています。

Facilitate workshop sessions in a one-step, multi-turn flow. Use when an interactive skill needs consistent pacing, options, and progress tracking.

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Guide the transition to VP or CPO across preparing, interviewing, landing, and recalibrating. Use when executive product scope is changing fast.

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Build an evidence-cited SWOT of one company — yours or a competitor's — from public sources, ending with the S-O/W-T crossings. Use for strategy reviews, board prep, or competitor depth.

日本語の概要は準備中です。原文の説明を表示しています。

Prioritize stakeholders using two complementary grids. Use when setting engagement strategy and surfacing whose voice needs elevating after stakeholder identification.

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Mine public reviews, app stores, and forums for unmet needs, competitor weaknesses, and switching triggers — with quoted evidence. Use when you want customer voice without waiting on interviews.

日本語の概要は準備中です。原文の説明を表示しています。

Write an Amazon-style press release that defines customer value before building. Use when aligning stakeholders on a new product, feature, or strategic bet.

日本語の概要は準備中です。原文の説明を表示しています。

Map a product's lifecycle stage and choose between extension, replacement, and retirement plays. Use when a product is maturing or declining and the next move isn't obvious.

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Create a user story map that lays out activities, steps, tasks, and release slices. Use when planning a workflow, backlog, or MVP around the user journey.

日本語の概要は準備中です。原文の説明を表示しています。