「cluster」の検索結果

Use when building a sample-level hierarchical clustering dendrogram from a bulk expression matrix and sample annotation table, especially for QC, batch inspection, or sample similarity assessment. Trigger keywords: hierarchical clustering, dendrogram, sample QC, batch inspection, sample similarity. NOT for: differential expression testing, gene clustering heatmaps, single-cell clustering workflows.

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When the user wants to plan content for SEO, create content calendar, or build topic clusters. Also use when the user mentions "content strategy," "content plan," "topic clusters," "pillar content," "pillar page," "cluster articles," "editorial calendar," "content hub," "content planning," "content clusters," "topic cluster strategy," "content strategy for SEO," or "content calendar." For editorial mix, use content-marketing.

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Manage multiple Kubernetes clusters, switch contexts, and perform cross-cluster operations. Use when working with multiple clusters, comparing environments, or managing cluster lifecycle.

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How to design a content hub that earns topical authority. Pillar topic selection, cluster planning, internal linking architecture, URL structure, pillar and cluster page anatomy, topical authority signals for SEO and AEO/GEO, and the maintenance discipline that distinguishes intentional hubs from accidental orphans. Triggers on pillar content, content hub, topic cluster, topical authority, content architecture, hub and spoke, pillar page, cluster page, content silo, internal linking strategy. Also triggers when a content set is not ranking despite individual piece quality, when a pillar was launched without a cluster, or when content has accumulated without an architecture.

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This package is a implementation of biclustering ensemble method MoSBi (Molecular signature Identification from Biclustering). MoSBi provides standardized interfaces for biclustering results and can combine their results with a multi-algorithm ensemble approach to compute robust ensemble biclusters on molecular omics data. This is done by computing similarity networks of biclusters and filtering for overlaps using a custom error model. After that, the louvain modularity it used to extract biclus

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Dimensionality reduction and clustering for single-cell RNA-seq using Seurat (R) and Scanpy (Python). Use for running PCA, computing neighbors, clustering with Leiden/Louvain algorithms, generating UMAP/tSNE embeddings, and visualizing clusters. Use when performing dimensionality reduction and clustering on single-cell data.

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Plans, executes, and validates Google Kubernetes Engine (GKE) cluster upgrades and maintenance operations for both Standard and Autopilot clusters. Produces upgrade plans, pre/post-upgrade checklists, maintenance runbooks with gcloud commands, release channel strategy, and troubleshooting guides. Handles node pool upgrade strategies (surge, blue-green), version compatibility, PDB management, and workload-specific concerns (stateful, GPU, operators). Use this skill whenever the user mentions GKE upgrades, Kubernetes version bumps, node pool maintenance, GKE patching, cluster version management, release channel selection, maintenance windows, surge upgrades, stuck upgrades, or any GKE lifecycle management task — even casual mentions like "we need to upgrade our clusters" or "plan our next GKE maintenance" or "our upgrade is stuck." Don't use for GKE cluster creation, application onboarding, general networking/routing setup, or security policy configurations (use gke-basics or relevant GKE skills instead).

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Plans, configures, and hardens platform-level Google Kubernetes Engine (GKE) cluster security. Covers cluster add-ons (Secret Manager enablement), RBAC hardening (disabling insecure bindings, audit tools), Binary Authorization, enabling Shielded Nodes, GKE Sandbox cluster enablement, GKE IAM roles, and cross-service authentication IAM patterns. Use when securing cluster control planes, hardening GKE RBAC, enabling Shielded Nodes, enabling GKE Sandbox runtime, enabling cluster-wide security add-ons, or managing GKE IAM roles. Don't use for workload-level security (Workload Identity, SecretProviderClass, PSS, NetPol, gVisor pod runtimeClassName; use gke-workload-security instead).

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Plans and executes GKE cluster creation, provisioning, and production readiness audits using pre-defined templates (Autopilot, Standard Regional, GPU/AI Inference, AI Hypercompute). Use when creating GKE clusters, provisioning GKE environments, selecting cluster modes, or auditing GKE clusters. Don't use for application onboarding or deployment configuration (use gke-app-onboarding instead).

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Finds over-permissive RBAC roles and service-account token abuse paths in a Kubernetes cluster using kubectl auth can-i, rbac-police, kubectl-who-can, and rakkess, tracing which subjects can escalate toward cluster-admin. Use when reviewing who can escalate privileges in a cluster, hunting exploitable RoleBindings during an authorized review, or validating least privilege after an RBAC change. Keywords: RBAC, ClusterRoleBinding, service account token, auth can-i, rbac-police, escalate, bind, impersonate. Do not use for designing and applying hardened RBAC - use implementing-rbac-hardening-for-kubernetes.

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Plans, configures, and manages core GKE cluster networking. Covers private clusters, VPC-native configurations, DNS, node egress, Dataplane V2, and IP planning. Use when designing GKE networking layouts, configuring private clusters, setting up Dataplane V2, planning GKE IP ranges, or managing VPC- native cluster modes. Don't use for application ingress, load balancing, or service networking (use gke-service-networking instead).

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Generates and updates secure, production-ready Kubernetes YAML manifests optimized for GKE Autopilot and GKE Standard clusters. Use when creating or modifying GKE deployment manifests, configuring container security contexts, setting CPU/memory resource limits, defining readiness/liveness/startup probes, mounting secrets and volumes, configuring GKE Gateway API routes, targeting Spot VMs, or deploying AI model inference workloads (vLLM, TGI, Gemma). Don't use for live cluster operations, pod troubleshooting (use gke-workload-troubleshooting), or cluster infrastructure provisioning (use gke-cluster-creation).

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KubeKey (kk) Usage Guide. For Kubernetes cluster lifecycle management including creation, scaling and deletion. Use this skill whenever the user mentions kubekey, kk commands, cluster setup, cluster management, adding nodes, deleting nodes, creating inventory files, configuring clusters, installing Kubernetes, or deploying K8s. Also use this skill when the user asks about inventory.yaml, config.yaml formats, CNI configuration, container runtime setup, offline installation, or artifact operations. Provides detailed guidance on kk subcommand usage, config file formats, inventory structure and common workflows.

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Enables Redshift system-table (SYS_*) log publishing to S3 Tables in Apache Iceberg format for both Provisioned clusters and Serverless namespaces, verifies publishing status, and queries the published logs via any Iceberg-compatible engine including Redshift and Athena. Covers system tables such as sys_query_history, sys_query_text, sys_connection_log, sys_query_detail, and sys_session_history. Applies when turning on S3 Tables log publishing for a cluster or namespace, confirming publishing status and locating the S3 Tables namespace, querying non-realtime data from Redshift system tables off-cluster at scale, or building dashboards for Redshift monitoring and auditing, especially for historical or high-volume system-table data beyond the in-cluster SYS_ view retention window. Trigger phrases: publish redshift system table log to s3 tables, enable-logging s3 tables, describe redshift logging status, query redshift system tables in athena or redshift, redshift log exports to iceberg.

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Creates a complete Amazon Aurora database cluster with instances, handling cluster creation, instance provisioning, and Secrets Manager password management in the proper sequence. Use when setting up new Aurora MySQL or PostgreSQL clusters with production-ready configuration.

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Infers person-to-person transmission from pathogen genomes using outbreaker2, TransPhylo, phybreak, BadTrIP, SCOTTI, BEASTLIER, and SNP-distance / cluster-picker approaches (HIV-TRACE for HIV; transcluster). Defines outbreak clusters using pathogen-specific SNP thresholds (NOT a universal cutoff -- TB <=12 SNPs; MRSA <=15; C. difficile <=2; Klebsiella <=21), models within-host diversity and transmission bottlenecks, integrates contact-tracing data, distinguishes generation from serial interval, and attributes source via Bayesian source attribution (islandR). Use when investigating outbreaks for who-infected-whom, defining SNP-cluster outbreak definitions, accounting for unsampled intermediates, choosing between outbreaker2 (rich epi data) and TransPhylo (genomic-only after a dated phylogeny), running source attribution between host populations, calling HIV-TRACE thresholds appropriate to the local subtype, or distinguishing recent transmission from reactivation in TB or chronic HIV.

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Cluster API lifecycle management for provisioning, scaling, and upgrading Kubernetes clusters. Use when managing cluster infrastructure or multi-cluster operations.

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Generate comprehensive issue reports from HyperPod clusters (EKS and Slurm) by collecting diagnostic logs and configurations for troubleshooting and AWS Support cases. Use when users need to collect diagnostics from HyperPod cluster nodes, generate issue reports for AWS Support, investigate node failures or performance problems, document cluster state, or create diagnostic snapshots. Triggers on requests involving issue reports, diagnostic collection, support case preparation, or cluster troubleshooting that requires gathering logs and system information from multiple nodes.

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Debug "API returns data that doesn't exist in database" when multiple Kubernetes clusters exist (production, staging, POC). Use when: (1) REST API returns records that direct database queries can't find, (2) Data counts match approximately but specific records don't overlap, (3) kubectl context points to a different cluster than the one serving the public domain, (4) ClickHouse/Postgres queries return stale or different data than the API, (5) "completely different datasets" despite same table names and schemas. Root cause: querying the wrong cluster's database.

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Fix cert-manager DNS01 ACME challenges stuck in "pending" state with "DNS record not yet propagated" inside GKE private clusters, even when TXT records exist in Cloudflare DNS. Use when: (1) cert-manager challenges show "pending" for hours with propagation check failures, (2) dig from outside cluster shows correct TXT records but cert-manager can't verify them, (3) Using Cloudflare DNS01 solver in a GKE private cluster with Cloud NAT, (4) Google Cloud intercepts 8.8.8.8 DNS queries returning NXDOMAIN for Cloudflare-managed records, (5) Even --dns01-recursive-nameservers with 1.1.1.1 doesn't fix the propagation check despite TXT records being verifiable from busybox pods in the same namespace. Covers the full debugging flow and certbot manual workaround.

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Research, expand, and cluster keywords for content strategy. Use when planning content topics, building keyword lists, expanding seed keywords, clustering by topic and intent, or mapping keywords to funnel stages. Triggers on "keyword research," "keyword expansion," "keyword clustering," "content topics," "what to write about," "topic ideation," "content planning," "6 circles method," "seed keywords," "keyword difficulty," "search volume," "intent mapping," "pillar content strategy," or "content calendar planning." For SEO optimization and auditing, see seo-and-aeo-strategy.

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Use when operating ProjectClownfish cluster workflows in this repo: reviewing GitHub Actions run artifacts, tuning worker/applicator guardrails, importing ghcrawl clusters, dispatching canaries, scaling batches, or deciding whether autonomous write-mode cluster cleanup is safe to ramp.

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Ascend cluster comparison tool. Invoke when user asks to compare two cluster datasets (DB or TEXT), or to generate cluster_analysis_output from raw profiling data via msprof-analyze and then compare.

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Cluster keywords by search intent and map each cluster to an existing or proposed page, with cannibalization detection from Search Console. Use this skill when the user has a keyword list (saved set, brand/keyword-plan.md, GSC export, or seed topic) and needs page targets, content briefs, or a site map for SEO pages — especially before seo-content or seo-machine page generation. Triggers: "cluster keywords", "keyword mapping", "map keywords to pages", "keyword cannibalization", "which page should target".

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