「conservation」の検索結果

Read, write, and convert multiple sequence alignment files using Biopython Bio.AlignIO. Supports Clustal, PHYLIP, Stockholm, FASTA, Nexus, and other alignment formats for phylogenetics and conservation analysis. Use when reading, writing, or converting alignment file formats.

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The epistack package main objective is the visualizations of stacks of genomic tracks (such as, but not restricted to, ChIP-seq, ATAC-seq, DNA methyation or genomic conservation data) centered at genomic regions of interest. epistack needs three different inputs: 1) a genomic score objects, such as ChIP-seq coverage or DNA methylation values, provided as a `GRanges` (easily obtained from `bigwig` or `bam` files). 2) a list of feature of interest, such as peaks or transcription start sites, provi

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Query UCSC Genome Browser REST API for DNA sequences, tracks, gene models, and conservation across 100+ assemblies. Retrieve sequence by region, list/fetch BED/bigWig tracks, chromosome sizes, RefSeq/GENCODE gene structures, PhyloP/PhastCons scores. Use for UCSC annotations; Ensembl REST API for Ensembl gene IDs and VEP variant annotation.

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Think and work like an expert Mathematical Modeler. Use when a task calls for Mathematical Modeler judgment. Reasons from nondimensionalization, conservation/positivity laws, and minimal-viable model structure through mechanistic ODE/PDE, stochastic, and agent-based formulations, profile-likelihood and Fisher-information identifiability, and Sobol/Morris sensitivity analysis, while treating sloppy unidentifiable parameters, structural model uncertainty, and out-of-regime extrapolation as first-class failure modes.

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Think and work like an expert Hydrogeologist. Use when a task calls for Hydrogeologist judgment. Reasons from Darcy's law, mass conservation, aquifer heterogeneity, and coupled biogeochemical transport through Theis and Cooper-Jacob aquifer-test analysis, MODFLOW/MT3DMS modeling with PEST uncertainty, and low-flow geochemical sampling while treating wellbore-storage and skin artifacts, equivalent-porous-medium failure in fractured/karst flow, and non-unique K-S calibration as first-class failure modes.

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Think and work like an expert Electrical Engineer. Use when a task calls for Electrical Engineer judgment. Reasons from Kirchhoff's laws, Maxwell's quasi-static limit, energy conservation, and LTI superposition through SPICE loop-gain and corner analysis, Bode gain/phase-margin checks, impedance-controlled layout, and IEC 62368/CISPR compliance, while treating unmodeled PCB parasitics, ground-return loops, protection let-through energy versus semiconductor SOA, and probe-artifact confounders as first-class failure modes.

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Think and work like an expert Computer Graphics Researcher. Use when a task calls for Computer Graphics Researcher judgment. Reasons from the rendering equation, Monte Carlo bias/variance, sampling theory, and BSDF energy conservation through pbrt-v4/Mitsuba 3 references, MIS/ReSTIR/path guiding, DXR 1.2 real-time stacks, 3DGS and NerfBaselines protocols, FLIP/ColorVideoVDP evaluation, OpenUSD/MaterialX/OpenPBR interchange, and ACES 2/OCIO color while treating unconverged references, unequal-time comparisons, denoiser and temporal-reuse bias, scene- vs display-referred color errors, and white-furnace energy failures as first-class failure modes.

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Think and work like an expert Chemical Oceanographer. Use when a task calls for Chemical Oceanographer judgment. Reasons from seawater thermodynamics, carbonate-system coupling (DIC, TA, pH, pCO2), redox hierarchies, and tracer conservation on density surfaces through CO2SYS/seacarb with Dickson CRMs, Winkler oxygen, IRMS isotopes, GO-FLO clean trace-metal sampling, and GLODAP/SOCAT/GEOTRACES synthesis while treating organic alkalinity, headspace equilibration, pCO2-mooring biofouling, and trace-metal contamination as first-class failure modes.

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Think and work like an expert Agricultural Entomologist. Use when a task calls for Agricultural Entomologist judgment. Reasons from pest population dynamics, economic injury levels and thresholds, and degree-day phenology through systematic scouting, IRAC mode-of-action rotation, RCBD efficacy trials, and conservation biocontrol while treating misidentification, secondary pest flares from enemy removal, resistance under repeated MoA, and trap-catch-without-field-verification as first-class failure modes.

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Read, write, and convert multiple sequence alignment files using Biopython Bio.AlignIO. Supports Clustal, PHYLIP, Stockholm, FASTA, Nexus, and other alignment formats for phylogenetics and conservation analysis. Use when reading, writing, or converting alignment file formats.

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Piaget's constructivism, schema theory, and cognitive development as practical tools for curriculum design. Covers assimilation, accommodation, equilibration, the four stages (sensorimotor, preoperational, concrete operational, formal operational), conservation tasks, schema-based reading and problem-solving, and the distinction between developmental readiness and domain-specific expertise. Use when designing age-appropriate material, diagnosing why a learner is not assimilating new content, or building on prior knowledge.

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Designing interventions, systems, and policies for sustainability. Covers renewable energy (solar, wind, hydro, geothermal), sustainable agriculture (agroecology, permaculture, integrated pest management), conservation strategies (protected areas, corridors, rewilding), lifecycle analysis, circular economy principles, and policy instruments (carbon pricing, cap-and-trade, regulation). Use when evaluating or designing interventions that aim to reduce environmental impact while maintaining human well-being.

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Balancing chemical equations, reaction classification, stoichiometric calculations, acid-base chemistry, oxidation-reduction (redox) reactions, and thermochemistry. Covers conservation of mass, mole ratios, limiting reagents, percent yield, Bronsted-Lowry and Lewis acid-base theory, pH calculations, oxidation states, half-reaction balancing, enthalpy, Hess's law, and calorimetry. Use when solving quantitative chemistry problems involving reactions, energy changes, or solution chemistry.

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Quotient redundant skill paths via coequalizers, preserving GF(3) conservation

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clj-kondo linter with Gay.jl 3-color integration for GF(3) conservation in Clojure code analysis.

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Category Theory Tripartite: SICP generic dispatch, CTP Racket categories, CatColab double theories across 3 parallel worldlines with GF(3) conservation

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Bisimulation game for resilient skill dispersal across AI agents with GF(3) conservation and observational bridge types.

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Validates GF(3) conservation across triadic braindance replays. Ensures MINUS+ERGODIC+PLUS=0.

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Brain-Computer Interface with colored operad security boundaries. Maximally isolated EEG/neural data processing via VM→Container→Process enclosure with GF(3) conservation for Agent-O-Rama neural pathways.

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Implement affective valence as directional derivative of interoceptive energy landscapes for AI alignment. Use when building alignment-aware RL agents, validating GF(3) conservation in reward signals, training Langevin-based policies, or analyzing fold-change detection signals in POMDP environments.

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World Extractable Value via Aptos orderless transactions with Strong Parallelism Invariance (SPI) guarantees and GF(3) conservation.

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Dynamically discover and load ACSet reference skills in dependency-optimal order using GitHub interactome analysis. Use when loading the acsets skill and needing its validation, generation, and coordination partners resolved automatically with GF(3) conservation guarantees.

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Model ElevenLabs voice synthesis as an ACSet schema with Unison ability handlers for typed voice operations. Use when integrating ElevenLabs TTS into category-theoretic pipelines, building typed voice synthesis workflows, or managing multi-voice narration with GF(3) conservation.

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Compatibility router for semantic skill tightening. Delegate goal recovery, authority, semantic conservation, evaluation contracts, and instruction optimization to Skill Lapidary rather than duplicating that system in Plugin Creator.

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