「duplication」の検索結果

Deploy DefectDojo as a centralized vulnerability management dashboard with scanner integrations, deduplication, metrics tracking, and Jira ticketing workflows.

日本語の概要は準備中です。原文の説明を表示しています。

Infer orthologous genes and gene families across species using OrthoFinder3 (HOG-based phylogenetic orthology), SonicParanoid2, Broccoli, ProteinOrtho, OMA / FastOMA hierarchical orthologous groups, eggNOG-mapper, JustOrthologs, and TOGA whole-genome-alignment orthology. Use when building single-copy ortholog sets for phylogenomics, classifying co-orthologs and in/out-paralogs after gene duplication, propagating functional annotation via orthology with awareness of the ortholog conjecture, distinguishing speciation from duplication via gene-tree species-tree reconciliation, computing Quest-for-Orthologs benchmark performance, or running synteny-aware ortholog detection in WGD-affected lineages.

日本語の概要は準備中です。原文の説明を表示しています。

Reconcile gene trees against a species tree under probabilistic models of duplication, transfer, and loss (DTL) using ALE (Szöllősi 2013 amalgamated likelihood), GeneRax (Morel 2020 ML reconciliation), AleRax (Morel 2024 co-estimation), Whale.jl (Bayesian DTL+WGD), RANGER-DTL 2 parsimony, NOTUNG, ecceTERA, and Treerecs. Use when inferring ancestral gene-family content, distinguishing duplication from horizontal transfer from differential loss, rooting deep species trees from gene-content signals (STRIDE / Williams 2017 ALE-rooting), counting DTL events per branch, refining noisy gene trees against a species tree, modeling WGD events jointly with DTL, or producing publication-grade gene-family histories for phylogenomic / comparative analyses.

日本語の概要は準備中です。原文の説明を表示しています。

Detect syntenic blocks and structural rearrangements between genomes using MCScanX (Wang 2012), JCVI/MCScan (Tang 2008 Python), GENESPACE (Lovell 2022) for orthology-anchored riparian visualization, SyRI for structural variation, AnchorWave for sequence-level synteny, i-ADHoRe 3.0 for highly diverged species, SynNet for synteny networks, and ntSynt for multi-genome macrosynteny. Use when identifying collinear gene blocks across species, distinguishing macrosynteny from microsynteny, detecting inversions/translocations/duplications, anchoring orthology in WGD lineages, producing publication riparian plots, computing synteny block age via Ks (cross-references whole-genome-duplication), or running synteny-aware ortholog inference in polyploids.

日本語の概要は準備中です。原文の説明を表示しています。

Improve code structure, readability, and maintainability without changing external behavior through systematic refactoring techniques like extracting functions, removing duplication, simplifying conditionals, and applying design patterns. Use when reducing technical debt, extracting functions or classes, removing code duplication, simplifying complex conditionals, renaming for clarity, applying design patterns, improving code organization, reducing coupling, increasing cohesion, or maintaining test coverage during structural improvements.

日本語の概要は準備中です。原文の説明を表示しています。

Detect syntenic blocks and structural rearrangements between genomes using MCScanX (Wang 2012), JCVI/MCScan (Tang 2008 Python), GENESPACE (Lovell 2022) for orthology-anchored riparian visualization, SyRI for structural variation, AnchorWave for sequence-level synteny, i-ADHoRe 3.0 for highly diverged species, SynNet for synteny networks, and ntSynt for multi-genome macrosynteny. Use when identifying collinear gene blocks across species, distinguishing macrosynteny from microsynteny, detecting inversions/translocations/duplications, anchoring orthology in WGD lineages, producing publication riparian plots, computing synteny block age via Ks (cross-references whole-genome-duplication), or running synteny-aware ortholog inference in polyploids.

日本語の概要は準備中です。原文の説明を表示しています。

Reconcile gene trees against a species tree under probabilistic models of duplication, transfer, and loss (DTL) using ALE (Szöllősi 2013 amalgamated likelihood), GeneRax (Morel 2020 ML reconciliation), AleRax (Morel 2024 co-estimation), Whale.jl (Bayesian DTL+WGD), RANGER-DTL 2 parsimony, NOTUNG, ecceTERA, and Treerecs. Use when inferring ancestral gene-family content, distinguishing duplication from horizontal transfer from differential loss, rooting deep species trees from gene-content signals (STRIDE / Williams 2017 ALE-rooting), counting DTL events per branch, refining noisy gene trees against a species tree, modeling WGD events jointly with DTL, or producing publication-grade gene-family histories for phylogenomic / comparative analyses.

日本語の概要は準備中です。原文の説明を表示しています。

Infer orthologous genes and gene families across species using OrthoFinder3 (HOG-based phylogenetic orthology), SonicParanoid2, Broccoli, ProteinOrtho, OMA / FastOMA hierarchical orthologous groups, eggNOG-mapper, JustOrthologs, and TOGA whole-genome-alignment orthology. Use when building single-copy ortholog sets for phylogenomics, classifying co-orthologs and in/out-paralogs after gene duplication, propagating functional annotation via orthology with awareness of the ortholog conjecture, distinguishing speciation from duplication via gene-tree species-tree reconciliation, computing Quest-for-Orthologs benchmark performance, or running synteny-aware ortholog detection in WGD-affected lineages.

日本語の概要は準備中です。原文の説明を表示しています。

GPU-accelerated data curation for LLM training. Supports text/image/video/audio. Features fuzzy deduplication (16× faster), quality filtering (30+ heuristics), semantic deduplication, PII redaction, NSFW detection. Scales across GPUs with RAPIDS. Use for preparing high-quality training datasets, cleaning web data, or deduplicating large corpora.

日本語の概要は準備中です。原文の説明を表示しています。

Deploy DefectDojo as a centralized vulnerability management dashboard with scanner integrations, deduplication, metrics tracking, and Jira ticketing workflows.

日本語の概要は準備中です。原文の説明を表示しています。

AIエージェントが読むスキルや指示文を、手順・参照情報・完了条件に整理し、必要な資料を読む条件の明確化や重複の削減まで支援する文書作成・編集のスキル。

• スキル文書を作成・編集したいとき
• AGENTS.mdやCLAUDE.mdの整理
• 参照資料を読む条件を明確にしたいとき

変数や関数の命名、読みやすさ、データの更新方法、エラー処理を共通の基準で見直します。新規開発やコードレビューで、保守しやすい書き方をそろえるスキル。

• 新規プロジェクトの規約を決めたいとき
• コードの読みやすさをレビューしたいとき
• 重複処理や深い条件分岐の整理

GitHubやLinear、ローカルの通知を棚卸しし、重要度と担当者に応じた届け先を設計します。重複や不要な通知を整理し、次の対応が分かる運用にまとめるスキル。

• 複数ツールの通知をまとめたいとき
• CI失敗の重複通知を減らしたいとき
• 緊急通知とまとめ通知の振り分け

変数や関数の命名、読みやすさ、元のデータを直接変更しない更新方法、エラー処理などの共通基準でコードを見直し、保守しやすい形に整えるスキル。

• 既存コードの命名と読みやすさのレビュー
• 長い関数や深い条件分岐を整理したいとき
• 新しいモジュールの規約をそろえたいとき

Python design patterns including KISS, Separation of Concerns, Single Responsibility, and composition over inheritance. Use this skill when designing a new service or component from scratch and choosing how to layer responsibilities, when refactoring a God class or monolithic function that has grown too large, when deciding whether to add a new abstraction or live with duplication, when evaluating a pull request for structural issues like tight coupling or leaking internal types, when choosing between inheritance and composition for a new class hierarchy, or when a codebase is becoming hard to test because of entangled I/O and business logic.

日本語の概要は準備中です。原文の説明を表示しています。

Coordinate parallel code reviews across multiple quality dimensions with finding deduplication, severity calibration, and consolidated reporting. Use this skill when organizing multi-reviewer code reviews, calibrating finding severity, or consolidating review results.

日本語の概要は準備中です。原文の説明を表示しています。

Deploy DefectDojo as a centralized vulnerability management dashboard that ingests findings from 200+ security scanners, deduplicates results, tracks remediation metrics, and integrates with CI/CD, Jira ticketing, and Slack notifications via its REST API. Use when consolidating scanner output into one dashboard or automating vulnerability ticketing and executive reporting.

日本語の概要は準備中です。原文の説明を表示しています。

Grow and manage a LinkedIn network with the Curviate CLI. Covers `connect` (send with a note, sent, received, accept, decline, cancel), `profile follow`/`unfollow`, `profile relations`, `profile followers` and `profile following`, the de-duplication signal for a connect loop, and the invitation propagation delay. Use when sending or withdrawing connection requests, triaging received invitations, following a member, or listing connections and followers.

日本語の概要は準備中です。原文の説明を表示しています。

Find leads matching criteria and bulk-add them to an Apollo outreach sequence. Handles enrichment, contact creation, deduplication, and enrollment in one flow.

日本語の概要は準備中です。原文の説明を表示しています。

Translates Snowflake dbt SQL models to Standardized BigQuery SQL. Handles SQL compilation, Jinja macro placeholder masking, BigQuery Translation Service migration workflows, AST-based config transformations, explicit type casting, JSON extraction standardization, and deduplication. Use when migrating Snowflake dbt pipelines or models to Google Cloud BigQuery. Don't use for generic BigQuery queries or non-Snowflake SQL migrations.

日本語の概要は準備中です。原文の説明を表示しています。

Expert knowledge for AI lead generation — web research, enrichment, scoring, deduplication, and report generation

日本語の概要は準備中です。原文の説明を表示しています。

Maintain the langbot-skills repository with low duplication. Use when adding, editing, or auditing LangBot skills, references, cases, troubleshooting entries, indexes, or periodic entropy-control checks for this skills repository.

日本語の概要は準備中です。原文の説明を表示しています。

Audit server-side paid-media measurement including server-side tag management, platform conversion APIs, event taxonomy, browser/server deduplication, consent, hashing, data quality, observability, and privacy. Use for server-side tracking, sGTM, server-side tagging, CAPI, Events API, event_id, pixel debugging, first-party measurement, or conversion data loss.

日本語の概要は準備中です。原文の説明を表示しています。

Parses and processes SARIF files from static analysis tools like CodeQL, Semgrep, or other scanners. Triggers on "parse sarif", "read scan results", "aggregate findings", "deduplicate alerts", or "process sarif output". Handles filtering, deduplication, format conversion, and CI/CD integration of SARIF data. Does NOT run scans — use the Semgrep or CodeQL skills for that.

日本語の概要は準備中です。原文の説明を表示しています。