55 件 ・ 関連度順
概要と使いどころ
Perform multiple sequence alignment using MAFFT, MUSCLE5, ClustalOmega, or T-Coffee. Guides tool and algorithm selection based on dataset size, sequence divergence, and downstream application. Use when aligning three or more homologous sequences for phylogenetics, conservation analysis, or evolutionary studies.
日本語の概要は準備中です。原文の説明を表示しています。
Phylogenetic tree construction, analysis, and evolutionary inference
日本語の概要は準備中です。原文の説明を表示しています。
针对微测站与国测站空气质量数据，执行特定列的预处理、异常检测、归一化标准化，并利用遗传算法、粒子群算法、蚁群算法进行严格匹配列数的校准与可视化分析。
日本語の概要は準備中です。原文の説明を表示しています。
Python framework for single- and multi-objective optimization with evolutionary algorithms. Define vectorized objectives and constraints; solve with NSGA-II, NSGA-III, MOEA/D, GAs, or differential evolution. Analyze Pareto fronts, visualize trade-offs, customize operators and callbacks. For engineering design, hyperparameter search, and conflicting objectives. Alternatives: scipy.optimize (single-objective, gradient), platypus, jMetalPy (Java).
日本語の概要は準備中です。原文の説明を表示しています。
Protein language models (ESM3, ESM C) for sequence generation, structure prediction, inverse folding, and embeddings. Design novel proteins, extract ML features, or fold sequences. Local GPU or EvolutionaryScale Forge API. Use AlphaFold for traditional folding; RDKit for small molecules.
日本語の概要は準備中です。原文の説明を表示しています。
Use AgileRL for reinforcement learning workflows: classical RL training, evolutionary HPO, evolvable networks, multi-agent PettingZoo training, offline/bandit data, and LLM fine-tuning.
日本語の概要は準備中です。原文の説明を表示しています。
Optimize DSPy programs with dspy.GEPA — a reflective/evolutionary optimizer to consider against task-specific baselines within an authorized evaluation budget. Use when the user says optimize, compile, GEPA, reflective optimization, or "make this program better" and a DSPy program + metric + trainset exist.
日本語の概要は準備中です。原文の説明を表示しています。
Estimate divergence times using molecular clock models with BEAST2, MCMCTree, and TreePL. Use when dating speciation events, calibrating phylogenies with fossils, choosing between strict and relaxed clock models, or estimating evolutionary rates across lineages.
日本語の概要は準備中です。原文の説明を表示しています。
Compute evolutionary distances and build phylogenetic trees using Biopython Bio.Phylo.TreeConstruction. Use when creating distance matrices from alignments, building NJ/UPGMA trees, generating bootstrap consensus, or needing quick exploratory phylogenies before running full ML analysis.
日本語の概要は準備中です。原文の説明を表示しています。
Analyze codon usage, calculate CAI (Codon Adaptation Index), and examine synonymous codon bias using Biopython. Use when analyzing coding sequences for expression optimization or evolutionary analysis.
日本語の概要は準備中です。原文の説明を表示しています。
Workflow for orthology, synteny, ancestral reconstruction, and evolutionary comparison across genomes.
日本語の概要は準備中です。原文の説明を表示しています。
Use when interpreting biological research findings, evaluating life science evidence, analyzing molecular or cellular mechanisms, comparing competing biological hypotheses, designing or critiquing experiments in biology, genetics, genomics, cell biology, immunology, neuroscience, ecology, or any life science domain. Triggers on questions about gene function, pathways, phenotypes, GWAS hits, single-cell data, animal models, clinical translation, evolutionary arguments, or any biology/life science reasoning task.
日本語の概要は準備中です。原文の説明を表示しています。
Run a Meta-Harness-style optimization loop NATIVELY — automatically search over the scaffolding around a FIXED base model (memory, retrieval, context construction, prompt templates, summarization, tool-selection logic) by proposing candidate variants, scoring each on a cheap deterministic eval, and keeping a Pareto frontier of quality vs cost — using native Agent / Workflow / loop tools instead of a standalone Python harness. Use this whenever the user wants to optimize, evolve, tune, distill, or search over a harness, scaffold, prompt system, memory or retrieval policy, context-assembly code, or summarizer while keeping the model fixed; whenever they mention Meta-Harness, harness optimization, scaffold evolution, automatic prompt/memory optimization, an evolutionary or Pareto search over candidate implementations, or "make the harness/agent better without retraining"; and whenever the gain must come from the code AROUND the model rather than the model weights. Reproduces the Meta-Harness paper's method natively, with no claude_wrapper.py and no metered solver API.
日本語の概要は準備中です。原文の説明を表示しています。
Comprehensive Artificial Life skill combining ALIFE2025 proceedings, classic texts (Axelrod, Epstein-Axtell), ALIEN simulation, Lenia, NCA, swarm intelligence, and evolutionary computation. 337 pages extracted, 80+ papers, 153 figures.
日本語の概要は準備中です。原文の説明を表示しています。
Comprehensive audit of a user's entire Claude environment — combines Project audit (six-dimension Project Scorecard, seven anti-patterns) with Global audit (six-dimension Global Layer Scorecard) plus Cross-Layer Alignment Check across all nine layers and Evolutionary Recommendations across four pathways. Produces a unified action plan. Use when user says "full audit of everything," "audit my entire Claude setup," "full stack audit," "comprehensive review of my project and preferences," "check everything," or wants the complete health check of both a specific Project AND their global configuration. Also use when a project audit reveals cross-layer issues that require full-stack visibility. Do NOT use for auditing only a Project (use rootnode-project-audit if available) or only global layers (use rootnode-global-audit if available). Do NOT use for single prompt evaluation (use rootnode-prompt-validation if available). Run on Opus 5 or Sonnet 5 at `high` effort (both defaults); depth reduces on legacy models.
日本語の概要は準備中です。原文の説明を表示しています。
Audits and optimizes the five global Claude layers (User Preferences, Styles, Global Memory, Skills, MCP Connectors) using the Global Layer Scorecard (six dimensions, anchored 1-5 rubrics). Detects eight cross-layer failure modes and produces evolutionary recommendations (Promotion, Demotion, Codification, Skill Extraction). Use when user says "audit my global setup," "optimize my preferences," "review my Claude configuration," "check my cross-project setup," "are my preferences working," "clean up my global memory," or "what should be in my preferences vs my project." Also use when a user has 3+ Projects and wants to improve their shared foundation. Do NOT use for single-Project audits, Project Memory optimization, or full-stack audits (use rootnode-project-audit, rootnode-memory-optimization, or rootnode-full-stack-audit respectively, if available). Run on Opus 5 or Sonnet 5 at `high` effort (both defaults); depth reduces on legacy models.
日本語の概要は準備中です。原文の説明を表示しています。
Run a Meta-Harness-style optimization loop NATIVELY — automatically search over the scaffolding around a FIXED base model (memory, retrieval, context construction, prompt templates, summarization, tool-selection logic) by proposing candidate variants, scoring each on a cheap deterministic eval, and keeping a Pareto frontier of quality vs cost — using native Agent / Workflow / loop tools instead of a standalone Python harness. Use this whenever the user wants to optimize, evolve, tune, distill, or search over a harness, scaffold, prompt system, memory or retrieval policy, context-assembly code, or summarizer while keeping the model fixed; whenever they mention Meta-Harness, harness optimization, scaffold evolution, automatic prompt/memory optimization, an evolutionary or Pareto search over candidate implementations, or "make the harness/agent better without retraining"; and whenever the gain must come from the code AROUND the model rather than the model weights. Reproduces the Meta-Harness paper's method natively, with no claude_wrapper.py and no metered solver API.
日本語の概要は準備中です。原文の説明を表示しています。
Expert in evolutionary biology, ecological systems, biodiversity, and conservation
日本語の概要は準備中です。原文の説明を表示しています。
Calculate alignment statistics including sequence identity, conservation scores, substitution matrices, and similarity metrics. Use when comparing alignment quality, measuring sequence divergence, and analyzing evolutionary patterns.
日本語の概要は準備中です。原文の説明を表示しています。
Perform multiple sequence alignment using MAFFT, MUSCLE5, ClustalOmega, or T-Coffee. Guides tool and algorithm selection based on dataset size, sequence divergence, and downstream application. Use when aligning three or more homologous sequences for phylogenetics, conservation analysis, or evolutionary studies.
日本語の概要は準備中です。原文の説明を表示しています。
Solves complex, open-ended problems using a knockout tournament mechanism. Generates an initial population of diverse candidate answers, pairs them into head-to-head matches, produces a hybrid "child" solution from each pair, and advances the best of the three through a bracket until a winner emerges. Use this skill whenever the user wants to competitively select the best answer from a field of alternatives, asks for a "tournament" or "bracket" style search, wants a faster alternative to full evolutionary search, or uses phrases like: "run a tournament on this", "bracket-style search", "let solutions compete", "knockout search", "find the best answer by elimination", or "which solution wins?". Also trigger when the problem is open-ended and the user wants a clear winner quickly rather than a deep multi-generation refinement.
日本語の概要は準備中です。原文の説明を表示しています。
Renombrado evolutivo de archivos con archivos wrapper. Permite renombrar sin rupturas drásticas — las referencias se actualizan orgánicamente mediante el uso.
日本語の概要は準備中です。原文の説明を表示しています。
使用包装文件进行渐进式文件重命名。无缝重命名，防止硬性中断 — 引用会在日常使用中有机地自动更新。
日本語の概要は準備中です。原文の説明を表示しています。
Эволюционное переименование файлов с помощью файлов-оберток. Позволяет переименовывать файлы без жестких сбоев — ссылки органично обновляются в процессе использования.
日本語の概要は準備中です。原文の説明を表示しています。