Normalizes and transforms RNA-seq count matrices for DE, visualization, clustering, and ML. Covers between-sample (TMM, TMMwsp, RLE/median-of-ratios, upper quartile), within-sample (TPM, FPKM/RPKM), variance-stabilizing (VST, rlog, log-CPM), GC-content correction (cqn, EDASeq), and single-cell (scran deconvolution, scanpy normalize_total). Encodes the composition-bias rationale, the "most genes not DE" assumption and its catastrophic failure modes (MYC amplification, apoptosis, viral host shutoff, prokaryotic stress), the "lengthScaledTPM is not TPM" naming trap, the "TPM is not for DE" rule, the blind=TRUE vs FALSE decision, ERCC spike-in normalization (SBN), and the single-cell zero-inflation breakdown of TMM/RLE. Use when choosing or applying normalization, debugging shifted-MA-plot diagnostics, handling zero-heavy single-cell data, or correcting GC bias.
日本語の概要は準備中です。原文の説明を表示しています。
lilinji/GeneTind-Life-Skills☆ 142026年8月21日 更新
Define database models with clear naming, appropriate data types, constraints, relationships, and validation at multiple layers. Use this skill when creating or modifying database model files, ORM classes, schema definitions, or data model relationships. Apply when working with model files (e.g., models.py, models/, ActiveRecord classes, Prisma schema, Sequelize models), defining table structures, setting up foreign keys and relationships, configuring cascade behaviors, implementing model validations, adding timestamps, or working with database constraints (NOT NULL, UNIQUE, foreign keys). Use for any task involving data integrity enforcement, relationship definitions, or model-level data validation.
日本語の概要は準備中です。原文の説明を表示しています。
lilinji/GeneTind-Life-Skills☆ 142026年8月21日 更新
Create and manage database migrations with reversible changes, proper naming conventions, and zero-downtime deployment strategies. Use this skill when creating database migration files, modifying schema, adding or removing tables/columns, managing indexes, or handling data migrations. Apply when working with migration files (e.g., db/migrate/, migrations/, alembic/, sequelize migrations), schema changes, database versioning, rollback implementations, or when you need to ensure backwards compatibility during deployments. Use for any task involving database structure changes, index creation, constraint modifications, or data transformation scripts.
日本語の概要は準備中です。原文の説明を表示しています。
lilinji/GeneTind-Life-Skills☆ 142026年8月21日 更新
Propose the next dependency-ready sprint from the ALREADY-DECOMPOSED roadmap — standup's active sibling. Reads docs/roadmap-execution-plan.md + the memory backlog, computes per-task readiness from the roadmap's machine-readable status, orders with roadmap-planner's graph engine, and emits a proposed task-set (sprint-plan manifest shape) with per-feature done-criteria, excluding unready tasks and naming their unmet prerequisite. PROPOSES ONLY — the human confirms/edits before /triage routes it (typically to the `power` track). Distinct from `sprint-plan`, which decomposes a fresh vision.
日本語の概要は準備中です。原文の説明を表示しています。
friedbotstudio/baseline☆ 142026年10月13日 更新
Write the production code that makes a pre-decided set of failing tests pass, within an explicit write_set, following an explicit behavior contract. Used by `/tdd` Step 3 and by `/swarm-dispatch` workers. The caller has already decided architecture, naming, file layout, and abstraction boundaries — this skill executes that recipe with code-structure discipline and a 5-iteration RALPH loop. No scope expansion, no design decisions, no test edits.
日本語の概要は準備中です。原文の説明を表示しています。
friedbotstudio/baseline☆ 142026年10月13日 更新
The sprint completeness oracle — a mechanical, exit-code-driven check that every feature in a sprint manifest is provably complete across three dimensions (a done-record reference, resolvable edge tests, and a resolvable wiring test). Fails loud with a per-feature gap list naming the missing dimension. Read-only. Use to gate a sprint before it is called done (Slice A of the sprint-mode epic), or any time you want a completeness reading.
日本語の概要は準備中です。原文の説明を表示しています。
friedbotstudio/baseline☆ 142026年10月13日 更新
Workflow Phase 2 — Codebase Scouting and Constraint Discovery. Maps the relevant slice of the codebase for a given task. Produces a scout report at `docs/scout/<slug>.md` naming the files, modules, and patterns the proposed work touches or constrains. Report decisions execute in main context with full conversation visibility; gathering MAY be delegated to read-only advisory subagents (seed.md §4.2-A).
日本語の概要は準備中です。原文の説明を表示しています。
friedbotstudio/baseline☆ 142026年10月13日 更新
Read-only view of the execution roadmap. Lists every epic with its per-status tallies, nests the still-open rows beneath their epic, collapses wholly-finished epics into one rollup line, and closes by naming the next planned task in file order. Four verbs — `list` (the reader's view), `tasks` and `epics` (filterable row and epic queries), `next` (the first planned task). Invoke any time to see what is left to build. Not a workflow phase; never writes; never starts or commits work.
日本語の概要は準備中です。原文の説明を表示しています。
friedbotstudio/baseline☆ 142026年10月13日 更新
コードの識別子(変数・関数・メソッド・クラス・型・ファイル)に名前を付けるときに使う。get の濫用をやめ、何をして値を得るのかが名前から読み取れる状態にする。実装時と、実装計画でメソッド名・クラス名を決めるときの両方で使う。
keitakn/engineering-skills☆ 142026年10月8日 更新
This skill should be used when the user asks to "create a plugin", "scaffold a plugin", "understand plugin structure", "organize plugin components", "set up plugin.json", "use ${CLAUDE_PLUGIN_ROOT}", "add commands/agents/skills/hooks", "configure auto-discovery", or needs guidance on plugin directory layout, manifest configuration, component organization, file naming conventions, or Claude Code plugin architecture best practices.
日本語の概要は準備中です。原文の説明を表示しています。
susomejias/rembric☆ 132026年10月13日 更新
Review database migration files for naming conventions and dangerous operations. Auto-activates for migration files.
日本語の概要は準備中です。原文の説明を表示しています。
davila7/claude-with-skills☆ 132026年5月15日 更新
Codex workflow tips from Boris Cherny (creator of Codex) and the Codex team. Use when: setting up Codex, optimizing workflows, running parallel sessions, configuring AGENTS.md, using skills/commands, subagents, hooks, MCP integrations, or learning best practices. Covers: git worktrees, plan mode, verification, permissions, Slack MCP, BigQuery, prompting tips, plugins, custom agents, sandboxing, keybindings, status lines, output styles, customization, /simplify for code quality, /batch for parallel code migrations, /loop for scheduled tasks, code review agents, /btw for mid-task questions, /effort max reasoning, remote control sessions, voice mode, setup scripts, session naming, /color, PostCompact hook, auto mode, /schedule cloud jobs, iMessage plugin, auto-memory, and auto-dream, mobile app, session teleporting, Cowork Dispatch, Chrome extension, Desktop app, /branch forking, --bare SDK startup, --add-dir multi-repo, --agent custom agents, /voice input.
日本語の概要は準備中です。原文の説明を表示しています。
phatblat/dotfiles☆ 122026年10月13日 更新
Claude Code workflow tips from Boris Cherny (creator of Claude Code) and the Claude Code team. Use when: setting up Claude Code, optimizing workflows, running parallel sessions, configuring CLAUDE.md, using skills/commands, subagents, hooks, MCP integrations, or learning best practices. Covers: git worktrees, plan mode, verification, permissions, Slack MCP, BigQuery, prompting tips, plugins, custom agents, sandboxing, keybindings, status lines, output styles, customization, /simplify for code quality, /batch for parallel code migrations, /loop for scheduled tasks, code review agents, /btw for mid-task questions, /effort max reasoning, remote control sessions, voice mode, setup scripts, session naming, /color, PostCompact hook, auto mode, /schedule cloud jobs, iMessage plugin, auto-memory, and auto-dream, mobile app, session teleporting, Cowork Dispatch, Chrome extension, Desktop app, /branch forking, --bare SDK startup, --add-dir multi-repo, --agent custom agents, /voice input.
日本語の概要は準備中です。原文の説明を表示しています。
phatblat/dotfiles☆ 122026年10月13日 更新
Validate current branch follows feature branch naming conventions
日本語の概要は準備中です。原文の説明を表示しています。
opsmill/nornir-infrahub☆ 122026年10月9日 更新
Validate current branch follows feature branch naming conventions
日本語の概要は準備中です。原文の説明を表示しています。
racecraft-lab/paddock-prototype☆ 122026年6月26日 更新
Write clean, readable, and maintainable code following principles from Robert C. Martin's "Clean Code" and Object Calisthenics. Use when writing, reviewing, or refactoring code to improve naming, function design, formatting, error handling, and class structure. Includes code smell detection and refactoring guidance.
日本語の概要は準備中です。原文の説明を表示しています。
fellipeutaka/website☆ 122026年3月11日 更新
Plan, write, and maintain automated tests in any language, with worked examples in Python and JavaScript/TypeScript. Use this skill whenever the user wants to write or plan tests, apply TDD (red-green-refactor), structure unit tests with arrange-act-assert and given-when-then naming, choose between fakes, stubs, and mocks, set up dependency injection for testability, build integration tests with testcontainers, database seeding, or transaction rollback, write Playwright or Cypress end-to-end tests, use property-based testing with Hypothesis or fast-check, create pytest fixtures or factory_boy factories, review coverage or mutation testing, or triage flaky tests in CI. Also trigger for "test pyramid", "test trophy", "test isolation", "mocking", "snapshot tests", "golden files", "parametrized tests", "make the tests pass".
日本語の概要は準備中です。原文の説明を表示しています。
svngoku/coding-agents-skills☆ 122026年10月13日 更新
Use when you need this project's coding standards (line length, quotes, import order, naming, commit format) — derive them from the REAL tooling config as a pointer + digest, never a guessed claim.
日本語の概要は準備中です。原文の説明を表示しています。
event4u-app/agent-config☆ 112026年10月13日 更新
Use when working with Terragrunt — DRY multi-env configs, module dependencies, remote state orchestration — even when the user just says 'deploy this to staging and prod' without naming Terragrunt.
日本語の概要は準備中です。原文の説明を表示しています。
event4u-app/agent-config☆ 112026年10月13日 更新
Use when writing Terraform — AWS modules, resources, variables, outputs, remote state — even when the user just says 'provision this infra' or 'add an S3 bucket' without naming Terraform.
日本語の概要は準備中です。原文の説明を表示しています。
event4u-app/agent-config☆ 112026年10月13日 更新
Writes or edits PHP code — controllers, classes, type hints, SOLID refactors, modern idioms — even without naming PHP. NOT for writing tests (use pest-testing) or explaining PHP concepts.
日本語の概要は準備中です。原文の説明を表示しています。
event4u-app/agent-config☆ 112026年10月13日 更新
Use when documenting APIs — OpenAPI/Swagger, PHP attributes, Redocly validation, versioned specs — even when the user just says 'document this endpoint' without naming OpenAPI.
日本語の概要は準備中です。原文の説明を表示しています。
event4u-app/agent-config☆ 112026年10月13日 更新
When writing validation — Form Requests, rules, custom rule objects, request-boundary design — even when the user just says 'validate this input' or 'check the request' without naming it.
日本語の概要は準備中です。原文の説明を表示しています。
event4u-app/agent-config☆ 112026年10月13日 更新
Use when creating or editing a guideline in docs/guidelines/ — reference material cited by skills, no auto-triggers — even when the user just says 'write up our naming conventions'.
日本語の概要は準備中です。原文の説明を表示しています。
event4u-app/agent-config☆ 112026年10月13日 更新