「scan」の検索結果

Queries the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need population-scale cell metadata, gene expression slices, Census summary counts, source H5AD URIs/downloads, embeddings, spatial Census data, or reference atlas comparisons across organisms, tissues, diseases, assays, and cell types. For analyzing your own local single-cell data use scanpy, anndata, or scvi-tools.

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Prepares bulk RNA-seq FASTQ, Salmon, STAR or featureCounts output for gene-level differential expression. Covers nf-core/rnaseq and standalone quantification, biological replication, strandedness, reference provenance, validated count assembly and a PyDESeq2 handoff. Use for FASTQ-to-counts analysis, nf-core/rnaseq configuration, STAR/Salmon quantification, or building a counts matrix for DESeq2. For single-cell data use scanpy; for statistical fitting alone use pydeseq2.

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Looks up precomputed AlphaGenome Atlas effects for any GRCh38 single-nucleotide variant (AVI score with Phred and 18 SHAP feature attributions, plus raw and quantile scores for RNA-seq, DNase, ATAC, ChIP-TF, ChIP-histone, CAGE, PRO-cap, splicing, polyadenylation and contact-map tracks), scores variants or scans windows on demand with the AlphaGenome model for human and mouse (variant scoring, in silico mutagenesis, REF-versus-ALT track prediction), and builds Atlas website deep links. Use when the user mentions AlphaGenome, AlphaGenome Atlas, AVI or AlphaGenome Variant Impact, DeepMind variant effect prediction, or wants to prioritise or mechanistically interpret non-coding, regulatory, splicing, enhancer, promoter, or chromatin-accessibility effects of SNVs from a VCF, credible set, or region. Research use only; not a clinical tool.

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Handles annotated matrices in single-cell analysis, .h5ad and Zarr files, and integration with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.

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Reconstruct slide images, screenshots, scanned PDFs, or image-only PPTX files as object-level editable PowerPoint. Use for 图片转可编辑PPT、截图还原PPT and diagram reconstruction; not authoring a new deck from research notes.

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Meta-skill que orquestra todos os agentes do ecossistema. Scan automatico de skills, match por capacidades, coordenacao de workflows multi-skill e registry management.

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Diff a live page's accessibility violations against a baseline — by default compares uncommitted changes (stash-based), or pass --branch [<name>] to diff against a branch. Reports only new violations introduced, violations fixed, and pre-existing count. Use `scan` for a full audit with no diffing.

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Audit a live page for accessibility issues, locate each WCAG violation precisely, and return a selector-grounded fix worklist without editing.

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Scan a codebase for deepening opportunities, present them as a visual HTML report, then grill through whichever one you pick.

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Configure Static Application Security Testing (SAST) tools for automated vulnerability detection in application code. Use when setting up security scanning, implementing DevSecOps practices, or automating code vulnerability detection.

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Find and fix flake-prone anti-patterns in an existing Cypress suite, and APIs removed in Cypress 12 to 16. Bundles a zero-dependency scanner for fixed cy.wait() delays, assigned command return values, async/await, force: true, chaining after actions, one-shot expect() inside .then(), conditional testing, and removed APIs such as Cypress.env(), cy.exec(), cy.server()/cy.route(). Use when asked to fix flaky Cypress tests, remove cy.wait, stabilize or harden a Cypress suite, audit Cypress specs, debug "detached from the DOM" errors, or prepare an upgrade to Cypress 15 or 16.

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Perform a systematic diagnostic scan of an AI workflow across 5 quality dimensions — prompt quality, context efficiency, tool health, architecture fitness, and safety — producing a scored report with prioritized remediation actions.

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Technology-agnostic prompt generator that creates customizable AI prompts for scanning codebases and identifying high-quality code exemplars. Supports multiple programming languages (.NET, Java, JavaScript, TypeScript, React, Angular, Python) with configurable analysis depth, categorization methods, and documentation formats to establish coding standards and maintain consistency across development teams.

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Converts PDF (.pdf) documents into Markdown so their contents can be accurately analyzed, summarized, searched, or extracted from. Use this skill whenever the user shares, references, or asks about a .pdf file — even if they don't say "convert" or "markdown" explicitly. This includes requests to "read", "summarize", "review", "extract data from", "compare", or "analyze" a PDF report, paper, invoice, form, contract, or scanned document. Always run the bundled conversion script to produce Markdown first; do not attempt to parse PDF content directly or write ad-hoc extraction code. Also use this skill for batch requests involving a whole folder of PDF documents. IMPORTANT: When the user references a folder or set of documents containing multiple file types (.pdf, .docx, .xlsx), invoke ALL three sibling skills — convert-pdf-to-md, convert-word-to-md, and convert-excel-to-md — so no file type is silently skipped.

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Audit and improve CLAUDE.md files in repositories. Use when user asks to check, audit, update, improve, or fix CLAUDE.md files. Scans for all CLAUDE.md files, evaluates quality against templates, outputs quality report, then makes targeted updates. Also use when the user mentions "CLAUDE.md maintenance" or "project memory optimization".

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Use when working with Terraform or OpenTofu - creating modules, writing tests (native test framework, Terratest), setting up CI/CD pipelines, reviewing configurations, choosing between testing approaches, debugging state issues, implementing security scanning (trivy, checkov), or making infrastructure-as-code architecture decisions

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Use this skill when the user explicitly wants to connect to a running Chrome browser, scan local CDP ports, specify a `cdp_port`, or share a single browser across multiple agents/tools. By default browser opens no debugging port; pass an explicit `cdp_port` only when the user wants another local tool to attach.

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Use this skill whenever the user wants to do anything with PDF files. This includes reading or extracting text/tables from PDFs, combining or merging multiple PDFs into one, splitting PDFs apart, rotating pages, adding watermarks, creating new PDFs, filling PDF forms, encrypting/decrypting PDFs, extracting images, and OCR on scanned PDFs to make them searchable. If the user mentions a .pdf file or asks to produce one, use this skill.

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Detect and prevent QR code phishing (quishing) attacks that embed malicious URLs inside QR code images to bypass link-based email security, using image-based threat detection, OCR/QR decoding, and mobile-side scanning (Microsoft Defender for O365, Proofpoint TAP, Barracuda Multimodal AI). Use when configuring gateway rules against QR phishing or investigating suspicious emails containing QR codes.

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Flag misspelled, brandjacked, and typosquatted package names across npm, PyPI, and crates.io before installation, using edit-distance, keyboard-proximity, and known-target corpus matching with typomania, Microsoft OSSGadget's oss-find-squats, and pypi-scan. Use before adding a new dependency, as a CI/CD gate on pull requests, when reviewing an AI-generated ("slopsquatting") dependency list, or when auditing a lockfile diff for a swapped package.

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Detects early-stage ransomware indicators in network traffic before encryption begins, including initial access broker activity, command-and-control beaconing, credential harvesting, reconnaissance scanning, and staging behavior. Uses network detection tools (Zeek, Suricata, Arkime), SIEM correlation rules, and threat intelligence feeds to identify ransomware precursor patterns such as Cobalt Strike beacons, Mimikatz network signatures, and RDP brute-force attempts. Activates for requests involving pre-ransomware detection, network-based ransomware indicators, or early warning ransomware monitoring.

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Discover and inventory shadow API endpoints that operate outside documented OpenAPI/Swagger specs, using traffic analysis against API gateways (Kong, AWS API Gateway, Envoy), cloud configuration scanning, and source code repository mining for undocumented routes. Use when assessing API attack surface, auditing for forgotten test environments or deprecated API versions still running, or building an API registration governance policy.

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Scans GitHub Actions workflows and CI/CD pipeline configurations for supply chain attack vectors including unpinned actions, script injection via expressions, dependency confusion, and secrets exposure. Uses PyGithub and YAML parsing for automated audit. Use when hardening CI/CD pipelines or investigating compromised build systems.

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Detect and prevent dependency confusion (public-over-private package name resolution) in npm, PyPI, and Maven by enumerating claimable internal package names with tools like `confused` and OWASP `dep-scan`, then enforcing source restrictions via `.npmrc`, `pip.conf`/`pyproject.toml`, and Maven `settings.xml`. Use when onboarding a repo to a supply-chain security program, auditing lockfiles/manifests for confusable dependencies, or after an incident that may have leaked internal package names.

日本語の概要は準備中です。原文の説明を表示しています。