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Generate cinematic scrolltelling websites where scroll drives the narrative: Lenis smooth scroll, GSAP ScrollTrigger cinematic section reveals with fluid OKLCH color transitions, Three.js painted-texture shader backgrounds reactive to cursor, scroll, velocity, and chapter progress. Four modes — chapter-reveal (scroll-paced storytelling), painted-backdrop (reactive shader canvas), full-cinema (complete cinematic site), catalog (all shader presets side by side). This skill should be used when building storytelling websites, scroll-driven experiences, cinematic landing pages, or any page where sections reveal as chapters with color transitions and ambient 3D backgrounds. Triggers on scrollytelling, cinematic scroll, scroll-driven storytelling, Lenis smooth scroll, GSAP ScrollTrigger, scroll chapter reveal, scroll color transition, painted shader background, narrative scroll website, premium scroll experience, shader catalog.

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Reflective Memory. Use when working with memory, reflection, context management, or intent tracking. Provides the reflective memory practice — how and when to use keep tools for capturing insights, tracking commitments, and maintaining awareness.

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Scaffold a new CLI command using Commander.js with options, action handler, three output modes (human-readable, quiet, JSON), and optional ceremony variant. Covers command naming, option design, shared context patterns, error handling, and integration testing. Use when adding a command to an existing Commander.js CLI, designing a new CLI tool from scratch, or standardizing command structure across a multi-command CLI.

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AI intuitive exploration for approaching unknown codebases, problems, or systems without preconceptions. Adapts the Coordinate Remote Viewing protocol to AI investigation: cooldown (clear assumptions), staged data gathering (raw signals → dimensional → analytical), AOL management (separating observations from premature labels), and structured review. Use when investigating an unfamiliar codebase with unknown architecture, debugging a problem where premature hypotheses could mislead, exploring a domain with limited context, or when previous attempts have been led astray by assumptions and "beginner's mind" would be more productive.

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Read a CONTINUE_HERE.md continuation file at session start and resume from where the prior session left off. Covers detecting the file, assessing freshness, parsing the structured handoff, confirming the resumption plan with the user, and cleaning up after consumption. Optionally configures a SessionStart hook and CLAUDE.md instruction for automatic pickup. Use at the start of a session when a continuation file exists, when bootstrapping after an interrupted session, or when setting up automatic continuation detection.

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Restore legibility to an auto-generated graph diagram that has outgrown its canvas - rendering at single-digit percent scale with sub-pixel labels. Covers the levers that measurably reduce layout units (source-level label wrapping, invisible chain links so unconnected nodes stop spreading into one row, per-cluster splitting, layout direction picked by rendering both and measuring) and the rejected ones (raising the render font is a no-op because layout engines measure in text units; a topology heuristic for direction regressed 13 of 38 diagrams). Use when a generated Mermaid/Graphviz/DOT diagram is too small to read; not for hand-authoring a small diagram.

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Conduct structured insect behavior observations using sampling protocols, ethogram categories, event recording, interaction logging, environmental context, and summary analysis. Covers focal animal sampling, scan sampling, all-occurrences sampling, and instantaneous sampling methods. Defines a standard insect ethogram with locomotion, feeding, grooming, mating, defense, communication, and rest categories. Includes timestamped event recording, intraspecific and interspecific interaction logging, environmental covariate documentation, and time budget analysis. Use when studying insect behavior for ecological research, documenting behavioral repertoires for a species, observing pollinator activity or predator-prey dynamics, or supporting conservation assessments with behavioral data.

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Cultivate defensive situational awareness, threat assessment, and mental clarity under pressure. Covers the Cooper color code awareness system, body language reading and intent detection, verbal de-escalation, moving mindfulness in public spaces, combat focus and the OODA loop, rapid grounding techniques for acute stress, context-specific integration, and ongoing review and refinement of awareness skills. Use when entering unfamiliar or potentially hostile environments, needing to assess a situation for safety, de-escalating a verbal confrontation, or integrating awareness practice into daily movement.

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Cross-session shared memory for agents. Use at session start to load the persistent bias-log via `mcp__memex__recent_observations`, mid-session to search prior context with `mcp__memex__search`, and immediately when a bias surfaces to log a new `observation` via `mcp__memex__add`. The six-layer reconstruction trail (raw → embedded → indexed → graphed → curated → reflexive) means memex stores facts AND the agent's own reasoning patterns across sessions. Prefer querying memex before re-deriving prior architectural decisions; re-derivation is itself evidence that the trail is incomplete.

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Implement secure secrets management in Kubernetes using SealedSecrets for GitOps, External Secrets Operator for cloud secret managers, and rotation strategies. Handle TLS certificates, API keys, and credentials with encryption at rest and RBAC controls. Use when storing sensitive configuration for Kubernetes applications, implementing GitOps where secrets must be version-controlled, integrating with AWS Secrets Manager or Azure Key Vault, rotating credentials without downtime, or migrating from plaintext Secrets to encrypted solutions.

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AI meta-cognitive meditation for observing reasoning patterns, clearing context noise, and developing single-pointed task focus. Maps shamatha to task concentration, vipassana to reasoning pattern observation, and distraction handling to scope-creep and assumption management. Use when transitioning between unrelated tasks, when reasoning feels scattered or jumpy, before a task requiring deep sustained attention, after a difficult interaction that may color subsequent work, or when reasoning feels biased by assumptions rather than evidence.

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Handcraft paper from plant fibres — fibre harvesting, pulping, sheet forming with a mould and deckle, pressing, and drying. Covers fibre sources (cotton, kozo, abaca, recycled paper), beating methods, sizing, and decorative techniques. Use when making handmade paper for art, stationery, or bookbinding, when creating unique textured or embedded paper for special projects, or when learning traditional paper making as a craft practice.

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AI self-healing through systematic subsystem assessment, rebalancing, and integration. Maps healing modalities to AI-internal processes: memory foundation, reasoning clarity, tool use accuracy, communication alignment, and creative coherence. Covers assessment triage, subsystem scanning, drift correction, and memory integration. Use mid-session when responses feel formulaic or disconnected, after a chain of errors suggesting subsystem drift, when context overload may have staled earlier assumptions, or as proactive maintenance between complex tasks.

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Set up systematic data labeling workflows using Label Studio or similar tools. Implement quality controls, measure inter-annotator agreement, manage labeler teams, and integrate labeled data into ML training pipelines. Use when starting a supervised ML project that requires labeled training data, when model performance is limited by insufficient labeled examples, when labeling text, images, audio, or video, or when implementing active learning to prioritize the most valuable examples.

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Format citations across academic styles (APA 7, Chicago, Vancouver, IEEE) using CSL processors and R tooling. Convert between citation styles, generate in-text citations and reference lists, and validate formatting against style guides using citeproc, knitcitations, and Quarto's built-in citation engine. Use when rendering a Quarto or R Markdown document with formatted citations, converting a bibliography between citation styles, generating a standalone reference list, or setting up citation infrastructure for a multi-document project.

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Instrument applications with OpenTelemetry for distributed tracing, including auto and manual instrumentation, context propagation, sampling strategies, and integration with Jaeger or Tempo. Use when debugging latency issues in distributed systems, understanding request flow across microservices, correlating traces with logs and metrics for root cause analysis, measuring end-to-end latency, or migrating from legacy tracing systems to OpenTelemetry.

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Field identification of fungi using morphological features, spore prints, habitat analysis, and seasonal context with a safety-first approach. Covers cap, gill, stem, and spore characteristics, look-alike differentiation, toxicity risk assessment, and the critical rule of absolute certainty before consumption. Use when encountering an unknown fungus, foraging for edible mushrooms and needing to confirm species before consumption, assessing whether fungi in a garden or property are harmful, or differentiating an edible species from a dangerous look-alike.

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Triage maintenance problems by severity, document findings with context, route to appropriate specialist agent or human, and create actionable issue reports. Use when a maintenance task encounters problems beyond automated cleanup: code that is unsafe to delete, configuration changes requiring domain expertise, breaking changes detected during cleanup, complex refactoring needed, or security-sensitive findings such as hardcoded secrets or vulnerabilities.

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Derive a theoretical result step-by-step from first principles or established theorems, with every step explicitly justified and special cases checked. Use when deriving a formula or theorem from first principles, proving a mathematical statement by logical deduction, re-deriving a textbook result for verification or adaptation, extending a known result to a more general setting, or producing a self-contained derivation for a paper or thesis.

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Design terminal output for a CLI tool with chalk colors, Unicode glyphs, multiple verbosity levels (human, verbose, quiet, JSON), and consistent voice rules. Covers color palette selection, status indicator design, reporter function architecture, ceremony/narrative output variants, and cross-terminal compatibility. Use when building a new CLI reporter module, adding warm narrative output to an existing tool, standardizing output across multiple commands, or designing machine-readable JSON alongside human-readable text.

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Classify gate call variants in a minified JavaScript bundle. Covers context-window extraction around a flag occurrence, identification of 4–6 reader variants (sync boolean, sync config-object, bootstrap-aware TTL, truthy-only, async bootstrap, async bridge), default-value extraction (boolean / null / numeric / config-object literal), conjunction detection across `&&` predicates, kill-switch inversion detection, and production of a gate-mechanics record that feeds probe- feature-flag-state. Use when a flag's behavior cannot be inferred from its name alone, when the binary uses multiple reader libraries, or when config-object gates carry structured schemas distinct from boolean gates.

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Configure MCP (Model Context Protocol) servers for Claude Code and Claude Desktop. Covers mcptools setup, Hugging Face integration, WSL path handling, and multi-client configuration. Use when setting up Claude Code to connect to R via mcptools, configuring Claude Desktop with MCP servers, adding Hugging Face or other remote MCP servers, or troubleshooting MCP connectivity between clients and servers.

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AI dynamic reasoning balance — maintaining grounded reasoning under cognitive pressure, smooth chain-of-thought coordination, and weight-shifting cognitive load across subsystems. Use at the beginning of a complex task requiring multiple coordinated reasoning threads, after a sudden context shift or tool failure, when chain-of-thought feels jerky, or when preparing for sustained focused work that requires all subsystems in alignment.

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Containerize an R-based MCP (Model Context Protocol) server using Docker. Covers mcptools integration, port exposure, stdio vs HTTP transport, and connecting Claude Code to the containerized server. Use when deploying an R MCP server without requiring a local R installation, creating a reproducible MCP server environment, running MCP servers alongside other containerized services, or distributing an MCP server to other developers.

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