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概要と使いどころ
Guides Claude in creating well-structured SKILL.md files following best practices. Provides clear guidelines for naming, structure, and content organization to make skills easy to discover and execute.
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Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.
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Query RCSB PDB (200K+ structures) via the public REST + GraphQL APIs with plain `requests` (no SDK). Search by text, attribute, sequence, or 3D structure similarity (Search API); retrieve metadata via GraphQL (Data API); download PDB/mmCIF from files.rcsb.org. For AlphaFold predictions use alphafold-database-access; for protein sequences only use uniprot-protein-database.
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Query IUPHAR/BPS Guide to Pharmacology (GtoPdb) for receptor-ligand interactions, target/ligand metadata, families, and approved drugs. Affinities (pKi/pIC50/pKd), action (Agonist/Antagonist/etc.), species, structures (SMILES/InChI). No auth. Always resolve targets via geneSymbol/accession; most metadata lives in sub-resources (/databaseLinks, /structure, /synonyms).
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Access AlphaFold DB's 200M+ predicted structures by UniProt ID. Download PDB/mmCIF, analyze pLDDT/PAE, bulk-fetch proteomes via Google Cloud. For experimental structures use PDB; for prediction use ColabFold or ESMFold.
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Read, write, and edit ChemDraw CDX/CDXML files with RDKit's rdkit.Chem.rdChemDraw plus direct XML editing, always paired with a rendered PNG. Parse molecules and reactions from .cdxml/.cdx, write structures with good 2D depiction, and hand-build or modify the parts RDKit cannot write: reaction arrows, plus signs, schemes/steps, and text/labels. Use for reaction schemes, synthesis routes, mechanisms, retrosynthesis, or SI figures. Critical: RDKit writes structures only — round-tripping a reaction through a Mol silently drops arrows and text; this skill shows the XML layer that preserves them. For pure molecular analysis (descriptors, fingerprints, SMARTS) use rdkit-cheminformatics; for multi-format 3D conversion use openbabel.
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mdtraj molecular dynamics trajectory analysis (Python). Reads DCD/XTC/TRR/NetCDF/H5/PDB topologies and trajectories; computes RMSD vs time, radius of gyration, per-residue RMSF, residue-residue contact frequency maps, phi/psi torsions for Ramachandran plots (general + Gly/Pro), and 8-state DSSP secondary structure. Modules: trajectory I/O, geometry (distances/angles/dihedrals), structural analysis (RMSD/Rg/RMSF/SASA), contacts, hydrogen bonds, secondary structure (DSSP), NMR observables. For broader atom-selection grammar use mdanalysis-trajectory; for running MD simulations use OpenMM/GROMACS.
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Python Materials Genomics library for structure analysis, thermodynamics, and electronic properties. Parse/create crystal structures (CIF, POSCAR), query Materials Project for DFT-computed properties, analyze phase and Pourbaix diagrams, compute XRD patterns, generate DFT inputs for VASP, Quantum ESPRESSO, CP2K. Alternatives: ASE (MD/geometry), AFLOW (high-throughput), OVITO (visualization).
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Structured peer review of manuscripts and grants. 7-stage evaluation: initial assessment, section review, statistical rigor, reproducibility, figure integrity, ethics, writing. Covers CONSORT/STROBE/PRISMA and report structure. For evidence quality see scientific-critical-thinking; scoring see scholar-evaluation.
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3Dmol.js WebGL molecular visualization emitted as self-contained HTML. Render structures (PDB/SDF/XYZ/MOL2/cube) with stick, sphere, cartoon, line, and surface styles; animate trajectories with a frame-delay (interval, ms) control; and animate vibrational normal modes via vibrate() from per-atom dx/dy/dz displacements or from precomputed frames. Output standalone HTML that loads 3Dmol from a CDN, with optional play/pause and speed controls. Use for transition-state imaginary-mode animations, MD or reaction-path playback, docking poses, and orbital/density isosurfaces. For static 2D chemical structure drawings use rdkit-chemdraw-cdxml; for 2D statistical plots use matplotlib or plotly.
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Predict RNA secondary structure, MFE folding, base-pair probabilities, RNA-RNA interactions via ViennaRNA Python bindings. Pipeline: sequence → MFE → partition function and pair-probability matrix → dot-bracket → duplex. Use for siRNA/sgRNA targeting, ribozyme design, RNA accessibility. Use RNAfold CLI for batch use without Python.
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Remove the discourse-level (structural) signs of AI writing that survive surface editing: stated lessons and moral-of-the-story closers, tidy single-track arcs, embodied-emotion performance ("chest tightened"), vague allusions instead of named references, unbroken linear structure, and shape convergence across pieces. Grounded in the StoryScope study (Russell et al. 2026): narrative structure alone detects AI text at 93.2% F1, and professional stylistic rewriting moved detection only 1.6 points. Use as the SECOND pass after the humanizer skill (which handles words and phrasing) whenever writing or revising LinkedIn posts, course lessons, blog posts, essays, newsletters, or emails that must read as human. Triggers: "humanize", "de-slop", "AI tells", "make this sound human", "structural pass", "deep humanize".
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Provides AWS CloudFormation patterns for CloudWatch monitoring, metrics, alarms, dashboards, logs, and observability. Use when creating CloudWatch metrics, alarms, dashboards, log groups, log subscriptions, anomaly detection, synthesized canaries, Application Signals, and implementing template structure with Parameters, Outputs, Mappings, Conditions, cross-stack references, and CloudWatch best practices for monitoring production infrastructure.
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When the user wants to create, review, or restructure a fundraising pitch deck for seed or Series A. Also activates when the user mentions "deck", "pitch", "investor presentation", or "slide structure".
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Extract structured data from construction PDFs. Convert specifications, BOMs, schedules, and reports from PDF to Excel/CSV/JSON. Use OCR for scanned documents and pdfplumber for native PDFs.
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Build RAG / unstructured-document evaluation datasets and demo documents (e.g. for Knowledge Assistant) on Databricks: generate synthetic PDFs locally, upload to Unity Catalog volumes, and pair each document with test questions for retrieval evaluation.
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Comprehensive guide to Spark Structured Streaming for production workloads. Use when building streaming pipelines, working with Kafka ingestion, implementing Real-Time Mode (RTM), configuring triggers (processingTime, availableNow), handling stateful operations with watermarks, optimizing checkpoints, performing stream-stream or stream-static joins, writing to multiple sinks, or tuning streaming cost and performance.
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Generates comprehensive operational runbooks for any system or process. Reads codebase, infrastructure config, and deployment scripts to produce structured runbook.md files formatted for on-call engineers. Use when you need operations documentation, incident response guides, deployment procedures, or disaster recovery plans.
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Refreshes README structure favoring concision (an index, not a manual). Use when the README needs a structural update after significant project changes.
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Applies hexagonal architecture isolating domain from infrastructure. Use when designing systems where testability and port/adapter separation are priorities.
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Analyzes and improves prompts using 31 frameworks across 7 intent categories. Use when a user wants to improve, rewrite, structure, or engineer a prompt — including requests like "help me write a better prompt", "improve this prompt", "what framework should I use", "make this prompt more effective", or any prompt engineering task. Recommends the right framework based on intent (create, transform, reason, critique, recover, clarify, agentic), asks targeted questions, and delivers a structured, high-quality result.
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Build automated PII detection and redaction pipelines using spaCy NER, Microsoft Presidio, and AWS Macie integration. Includes confidence scoring, custom entity type definitions, batch processing workflows, and multi-format document scanning for structured and unstructured data sources.
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Implement the Kantara Initiative consent receipt specification including machine-readable receipt structure, JWT-based verification mechanisms, receipt lifecycle management, and integration patterns for consent management platforms. Supports ISO/IEC 27560 consent record information structure.
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Use when the project follows hexagonal (ports & adapters) architecture. Prevents domain code from depending on Spring or JPA. Use when you see packages like domain/, application/, infrastructure/, or adapters/ in the project structure.
日本語の概要は準備中です。原文の説明を表示しています。