1,122 件 ・ 関連度順
概要と使いどころ
Annotated matrices for single-cell genomics. Stores X with obs/var metadata, layers, embeddings (obsm/varm), graphs (obsp/varp), uns. Use for .h5ad/.zarr I/O, concatenation, scverse integration. For analysis use scanpy; for probabilistic models use scvi-tools.
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Multi-Omics Factor Analysis v2 (MOFA+) with mofapy2. Jointly decompose omics layers (scRNA, ATAC, proteomics, methylation) into latent factors capturing major variation. Multi-group designs. AnnData views → MOFA object → train → variance explained → correlate factors with metadata → visualize/cluster → enrich top loadings.
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Look up EMDB cryo-EM density maps and fitted atomic models via the entry REST API + EBI Search WS. Fetch entry metadata (resolution, method, organism, sample), map download URLs, fitted PDB IDs, and citations. Keyword search via EBI Search. No auth. For atomic coordinates use pdb-database; for AlphaFold predictions use alphafold-database-access.
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Query RCSB PDB (200K+ structures) via the public REST + GraphQL APIs with plain `requests` (no SDK). Search by text, attribute, sequence, or 3D structure similarity (Search API); retrieve metadata via GraphQL (Data API); download PDB/mmCIF from files.rcsb.org. For AlphaFold predictions use alphafold-database-access; for protein sequences only use uniprot-protein-database.
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Query bioRxiv/medRxiv preprints via REST API. Search by DOI, category, or date range; retrieve metadata (title, abstract, authors, category, DOI, version history) and PDFs. No auth. For peer-reviewed biomedical use pubmed-database; broader scholarly search use openalex-database.
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Access USPTO patent data via PatentsView REST API and Google Patents Public Data (BigQuery). Search by inventor, assignee, CPC, or keywords; download metadata and claims; analyze portfolios; track tech trends. For IP landscape analysis, competitor monitoring, prior art search, and tech forecasting in life sciences and biotech.
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Python API v2 for Opentrons OT-2/Flex liquid handlers: protocols as Python files with metadata and run(); control pipettes, labware, and modules (thermocycler, heater-shaker, magnetic, temperature). Simulate via opentrons_simulate then upload. Use PyLabRobot for vendor-agnostic scripts (Hamilton, Tecan).
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Search the PRIDE Archive v3 REST API for proteomics datasets: discover projects by keyword + faceted filters (organism, instrument, disease, software), fetch project metadata, list and download RAW/PEAK/RESULT/FASTA files (with FTP/Aspera URLs), look up which projects mention a UniProt accession, and find similar projects. PRIDE v3 no longer exposes peptide/PSM-level identification endpoints — for spectrum-level data download the project's RESULT files. Use uniprot-protein-database for protein sequences; interpro-database for domain architecture.
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Parse/write FCS (Flow Cytometry) files v2.0-3.1. Events as NumPy, channel metadata, multi-dataset files, CSV/FCS export. Use FlowKit for gating/compensation.
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Rewrite and audit SEO page titles, title tags, MDX frontmatter titles, H1 alignment, and bulk title improvements. Use when the user mentions titles, title tags, SERP titles, metadata titles, SEO titles, CTR, truncation, or asks to improve titles across pages.
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Provides comprehensive code review capability for Next.js applications, validates Server Components, Client Components, Server Actions, caching strategies, metadata, API routes, middleware, and performance patterns. Use when reviewing Next.js App Router code changes, before merging pull requests, after implementing new features, or for architecture validation. Triggers on "review Next.js code", "Next.js code review", "check my Next.js app".
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Analyze construction drawings to extract dimensions, annotations, symbols, and metadata. Support quantity takeoff and design review automation.
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Continue the current local Codex conversation and coding task in an AgentKit Studio cloud Codex Sandbox using a Studio URL and short one-time pairing code. Use when the user asks to hand off, migrate, or continue a local repository in Studio, especially when a prompt contains a Studio address and pairing code. Export the complete user-visible user and assistant message history from every prior turn, including interrupted turns and progress commentary, create a temporary Studio Sandbox, restore tracked and non-ignored working-tree files plus Git metadata, inject that visible history into the cloud Thread, transfer GitHub CLI authentication separately when needed, and send one final continuation message; never copy system or developer prompts, reasoning, tool logs, SQLite state, global configuration, local skills, or SSH private keys.
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Use when analyzing a researcher's publication record from PubMed. Fetches an author's papers, classifies study types and author position, charts the patterns and writes a strategy report, with an optional trajectory-archetype classification. Works from PubMed metadata only.
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Use the GeoParquet specification and bundled inspection helpers to author, validate, distribute, or safely review geospatial Parquet data, including GeoParquet 2.0 vector metadata, external writer choices, and the alpha Parquet Raster proposal.
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Operate and extend GeoNode geospatial content-management deployments, resource APIs, uploads, metadata/catalogues, GeoServer security, harvesting, and administration with explicit service and safety gates.
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Route auto-sklearn AutoML estimator, data validation, search, custom component, and metadata-maintenance workflows.
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Use ANTsPy/antspyx for medical image IO, ANTsImage metadata, image operations, registration, segmentation, visualization, and learning helper workflows.
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Evidence hygiene before any FIND moves to Completed or enters a report. Cookie redaction, PII black-bar, HAR sanitization, screenshot metadata strip. Run after /triage passes and before final report assembly.
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SSRF hunting - OOB-mandatory methodology. Cloud metadata, blind SSRF via Collaborator/interactsh, redirect-based bypass, headless browser chains. Wiki-first, FIND schema output.
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Cloud attack hunting for AWS / Azure / GCP - credential discovery, metadata SSRF, IAM privesc, service enumeration, persistence. Scope + billing aware. Wiki-first, FIND schema output.
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Use when adding, editing or reviewing skills, role prompts or skill metadata.
日本語の概要は準備中です。原文の説明を表示しています。
Use when checking skill metadata, references or repository boundaries, or preparing an explicitly requested skills release.
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Implements email and internet monitoring compliance in the workplace per Barbulescu v Romania (ECHR Grand Chamber), EDPB guidance, and national labour law. Covers acceptable use policies, legitimate expectation of privacy, proportionality testing, and content vs metadata monitoring. Keywords: email monitoring, Barbulescu, workplace privacy, internet monitoring, acceptable use policy, ECHR, proportionality.
日本語の概要は準備中です。原文の説明を表示しています。