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Use this skill to deploy and operate a CollectX (clx) based DOCA telemetry collector on a host or BlueField — wiring providers / counters into the collector, running the collection daemon, and shaping its exporters (Prometheus pull, Fluent Bit push, NetFlow, file / IPC) so the metrics actually leave the box. Trigger even when the user never says CollectX or clx — implicit phrasings: {collector emits nothing downstream}, {add a provider to the clx collector}, {turn on the Prometheus endpoint}, {ship counters to Fluent Bit from the DPU}, {daemon starts but no schema rows appear}. This skill owns the CollectX collection mechanism plus the operator's own doca-telemetry / doca-telemetry-exporter usage; it ROUTES the productized DOCA Telemetry Service (DTS) to public docs (AGENTS.md Non-goal #7), the reader API to doca-telemetry, and the publisher API to doca-telemetry-exporter. Refuse to invent clx symbols, provider names, schema fields, flags, or config paths — describe the class and route to the live source.

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Run `doca_bench` (DOCA 2.7.0 or newer) to measure throughput, bulk latency, precision latency, or maximum bandwidth for RDMA, Compress, AES-GCM, SHA, DMA, EC, Ethernet, Comch, or GPUNetIO on a host or BlueField Arm. Use it to discover enabled benchmark libraries, capture a reproducible command/version/device/environment baseline, compare stable runs against a declared tolerance, or diagnose configuration, device-binding, workload-precondition, and measurement failures. Trigger for requests such as measuring BlueField compression speed, NIC RDMA throughput, crypto latency, or a pre-upgrade baseline. Do not use for application end-to-end timing, custom benchmark code, DOCA installation, or binary patches.

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Use this skill when the user is doing hands-on DOCA Flow DPA Provider work — exporting a `doca-flow` pipe or external resource (index-selector/memory) into BlueField DPA address space so a DPACC-built kernel can read counters, mutate hash-pipe entries, and update/read memory or index-selector resources inline with Flow. Covers per-port `doca_flow_dpa_ctx`, three queue types (general/resources-write/resources-read), the order-sensitive export handshake (`_export_prepare` → add entries → `_export` → `_get_device_addr`), and DPA-side device API. Trigger even when the user does not say "DOCA Flow DPA Provider" — implicit phrasings include "DPA kernel never sees entries in the exported pipe", "BAD_STATE from `_pipe_export`", "how do I disable a hash entry from a DPA kernel", "DPA memory read returns no value", or "DPA-side post keeps returning AGAIN". Refuse and route elsewhere for `doca-flow` pipe construction, generic host-side DPA (`doca-dpa`), or DPA-side kernel-writing — those belong to other skills.

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Use this skill when the user is doing hands-on DOCA Rivermax work on a BlueField DPU or ConnectX host — standing up `doca_rmax_in_stream` (receive) sessions for timing-precise media-over-IP (SMPTE ST 2110 video/audio, market data, scientific feeds), confirming the Rivermax SDK + license precondition before any DOCA-side code, running `doca_rmax_get_*_supported` capability queries, pairing with `doca-eth` queues and `doca-flow` steering, or debugging `DOCA_ERROR_*` from a Rivermax call. Trigger even when the user does not explicitly mention "DOCA Rivermax" or "rmax" — implicit phrasings include "ST 2110 receive isn't getting frames", "sub-microsecond jitter on BlueField", "NOT_SUPPORTED from doca_rmax_init", "no recv events after stream start", or "license check failing on a media receiver". Refuse and route elsewhere for installing the Rivermax SDK or its license, programming the underlying queue (`doca-eth`), steering rules (`doca-flow`), or best-effort packet I/O — those belong to other skills.

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Use this skill for hands-on DOCA Compress programming on a BlueField DPU, ConnectX NIC, or host with DOCA — enabling compress-deflate, decompress-deflate, decompress-lz4-stream, or decompress-lz4-block tasks on a doca_compress context (the hardware supports DEFLATE both directions plus LZ4 decompress; LZ4 encode is NOT supported), sizing source / destination doca_buf against the per-task cap query, setting mmap permissions, deciding offload vs CPU zlib / zstd, validating with a round-trip smoke, or debugging DOCA_ERROR_* from a Compress call. Trigger on phrasings like "offload this gzip", "decompress incoming network data", "compress task returns INVALID_VALUE on alloc_init", "submitted a task but no completion arrives", or "decompress LZ4 on the BlueField." Refuse and route elsewhere for non-DEFLATE / non-LZ4 algorithms (zstd / Snappy / brotli), LZ4 encode (route to a CPU LZ4 library), pure mmap-to-mmap copies (doca-dma), or DOCA Core lifecycle internals.

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Use this skill to enumerate host↔DPU DOCA comch (formerly Comm Channel) servers and connections via the shipped doca_comm_channel_admin binary — listing comch-capable devices and decoding the per-device server / connection table (server name, PID, in-use / max, PCIe address). The shipped binary is a SINGLE-SHOT SCAN-AND-PRINT tool with no registered arguments — NO list / inspect / drain / restart subcommands; one inventory pass over every comch-capable doca_dev on this side. Channel reset / drain / restart go to doca-comch (program side), doca-setup / doca-hardware-safety (driver reload), or BFB / RShim — NOT to this binary. Trigger on phrasings like "list comch servers", "which channels are active on this BlueField", or "verify admin tool sees same channel as program." Refuse and route elsewhere for the comch programming API, library install, protocol design, channel reset, or general orientation.

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Use this skill when the user is hands-on deploying an in-bundle DOCA service container (Argus, DMS, Firefly, or UROM service) on a BlueField — kubelet standalone watching a static-pod manifests directory, YAML pod-spec drop, kubelet status / ENTRYPOINT logs / per-service liveness, smoke-before-bulk, and the layered error taxonomy (pod-spec, scheduling, image pull, runtime, mount, network, version, host). Trigger even when the user does not say "container deployment" — typical implicit phrasings include "how do I run my built service on the BlueField?", "where do I drop the pod-spec YAML?", "pod stuck in Pending / ImagePullBackOff / CrashLoopBackOff", "container Running but service isn't ready", "pod restart-loops after edit", or "DMS and Firefly together". Refuse and route elsewhere for per-service config schemas, DOCA install, library-API questions, external NVIDIA services (BlueMan, HBN, SNAP, Virtio-net), or full Kubernetes-cluster ops — those belong to other skills.

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Use this skill when the user is doing hands-on DOCA Erasure Coding programming on a BlueField DPU, ConnectX NIC, or host — bringing up a doca_ec context, picking among the create / recover / update tasks, choosing matrix type / N / K / block size, querying doca_ec_cap_* before sizing, setting doca_mmap src/dst permissions, or debugging DOCA_ERROR_* returns from doca_ec_task_*. Trigger even when the user does not name "DOCA Erasure Coding" or "Reed-Solomon" — typical implicit phrasings include "one data block changed, how do I refresh parity without re-encoding", "a disk failed and 2 parity blocks are gone, can I rebuild", "RAID-6 resilience across 12 disks", "my doca_ec_task_create returns NOT_PERMITTED", or "is this N+K layout still recoverable". Refuse and route elsewhere for non-Reed-Solomon codes (fountain / LDPC / raptor), pure-replication designs, network FEC, or other DOCA accelerator libraries (SHA / Compress / AES-GCM / DMA) — those belong to other skills.

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Use this skill when the user is doing hands-on DOCA RDMI (RDMA Initiator) programming — picking doca-rdmi vs doca-rdma for an accelerator-initiated one-sided RDMA flow, standing up a doca_rdmi_connection or doca_rdmi_poster, attaching a doca_dpa_completion or doca_verbs_cq before doca_ctx_start(), retrieving the DPA-side handle for a DPA kernel, auditing whether a doca_rdmi_* symbol is EXPERIMENTAL on this DOCA, or debugging DOCA_ERROR_* returns from RDMI calls. Trigger even when the user does not say "DOCA RDMI" or "initiator" — implicit phrasings include "my DPA kernel needs to post RDMA writes to a remote responder", "DPA kernel sees no completions", "function not found on doca_rdmi_* at link time", "DOCA_ERROR_BAD_STATE from completion attach", or "the DPA posted but the work request never arrived". Refuse and route elsewhere for two-sided or host-CPU RDMA, the DPA programming model, GPU-side RDMA initiation, or general RDMA/IB/RoCE concepts — those belong to other skills.

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Use this skill for hands-on DOCA Ethernet packet-queue work on a BlueField DPU or ConnectX NIC — bringing up a `doca_eth_rxq` or `doca_eth_txq` on a port / representor / SF, picking among the four `enum doca_eth_rxq_type` values (`_REGULAR` / `_CYCLIC` / `_MANAGED_MEMPOOL` / `_SHARED_MEMPOOL`), sizing burst or scatter-gather length against the `_cap_*` queries, submitting `doca_eth_txq_task_send` / `_lso_send` (carrying packet `doca_buf`s — no `doca_eth_frame` struct exists), or debugging DOCA_ERROR_* from an Ethernet call. Trigger on implicit phrasings: "my RX queue is up but no packets arrive", "send-task returns AGAIN at line rate", "which queue type for fixed-MTU ingress", "device open fails without sudo", or "is L3 checksum offload available here". Refuse and route elsewhere for installing DOCA, flow-rule / steering programming, host↔DPU control messaging, or RDMA data movement.

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NOTE: molecule and target inputs and your NGC_API_KEY are transmitted to external NVIDIA-hosted API endpoints on every call. Use local NIM containers for confidential or proprietary data. Run a complete computational drug discovery pipeline using NVIDIA BioNeMo NIMs: generate drug-like molecules with GenMol, dock them to a protein target with DiffDock, then predict binding affinity with Boltz2. Use this skill whenever the user wants to generate and screen small molecule drug candidates, perform hit discovery, optimize leads against a protein target, or do virtual screening combining molecule generation, docking, and affinity prediction. Triggers on: drug discovery pipeline, hit discovery, lead optimization, virtual screening, molecule generation, molecular docking, binding affinity, GenMol, DiffDock, Boltz2, SMILES, SAFE notation, NIM microservice. This is a multi-step pipeline composing three BioNeMo NIMs.

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Use this skill for OpenFold3, NVIDIA's BioNeMo NIM microservice for biomolecular structure prediction. Invoke whenever the user mentions OpenFold3 or needs protein, protein-ligand, protein-DNA/RNA, or multi-chain complex prediction with the hosted NVIDIA API or local Docker NIM. Covers endpoint choice, auth, request payloads, output artifacts, confidence scores, and local container setup.

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Extract per-molecule embeddings from any encoder-bearing KERMT checkpoint. Use a local checkpoint or optionally download a pinned Hugging Face model bundle using HF_TOKEN if configured. Run containerized embedding extraction and write model bundles, per-readout .npy embeddings, canonical SMILES, and validity arrays to user-selected host directories.

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Bootstrap the KERMT agent environment — verify host docker + nvidia-container-toolkit, build the kermt:latest image from the repo's Dockerfile if it doesn't yet exist, and run a GPU smoke test inside the container. Every other kermt-* skill depends on this; invoke it first.

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Generate and analyze DNA sequences using NVIDIA's Evo 2 BioNeMo NIM microservice. Use for Evo2/Evo 2, DNA generation, genomic sequence generation, hosted generation, local Docker deployment, local forward passes, layer outputs, logits, sampled probabilities, and BioNeMo NIM workflows.

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Use this skill for MolMIM, NVIDIA's BioNeMo NIM microservice for small-molecule latent-space generation and optimization. Invoke for MolMIM, molecular embeddings, hidden states, latent decoding, sampling around a seed SMILES, CMA-ES guided molecule generation, QED or plogP optimization, hosted NVIDIA API calls, or local Docker deployment.

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Continue KERMT pretraining on a custom SMILES corpus with a grover_base, cmim, or hybrid checkpoint. Use a local checkpoint or optionally download a pinned Hugging Face model bundle using HF_TOKEN if configured. Run containerized training and write model bundles, prepared data, logs, and checkpoints to user-selected host directories.

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Use Boltz2 NIM for biomolecular structure prediction and binding affinity. Invoke for Boltz2, protein structures, protein-ligand/DNA/RNA complexes, SMILES or CCD ligands, pIC50/IC50 affinity scoring, mmCIF output, hosted NVIDIA API calls, or local Docker deployment.

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NOTE: your protein sequence and the retrieved MSA alignment are transmitted to external NVIDIA-hosted APIs (health.api.nvidia.com) on every call. Use local NIM containers for confidential or proprietary sequences. Run a complete protein structure prediction pipeline using NVIDIA BioNeMo NIMs: search for MSA alignments with MSA-Search (ColabFold), then predict the structure with OpenFold3 using the retrieved alignments. Use this skill whenever the user wants to predict a protein structure with maximum accuracy using MSA context, run the full AlphaFold3-style pipeline, generate MSA-informed structure predictions, or improve structure prediction accuracy by providing evolutionary information. Triggers on: MSA structure prediction pipeline, structure prediction pipeline, MSA-informed prediction, OpenFold3, ColabFold MSA, AlphaFold3 pipeline, protein structure, homology search, a3m alignment, UniRef30, NIM microservice. This pipeline chains MSA-Search and OpenFold3.

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Generate multiple sequence alignments (MSAs) for protein sequences using the ColabFold MSA-Search NIM. Use for homolog search, UniRef30/ColabFold env searches, A3M or FASTA alignments, paired MSA search for complexes, PDB70 structural templates, hosted NVIDIA API calls, or local Docker deployment. For local deployment, download the databases in parallel with aria2c and launch via NIM_MODEL_NAME (the recommended default fast path, ~14 min vs over 80 min for the built-in downloader); a plain docker run uses the slow built-in downloader.

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Run ProteinMPNN inverse folding via NVIDIA NIM to design protein sequences for a target backbone. Sends user-provided PDB files and design parameters to NVIDIA's hosted API, authenticated with an environment API key, or to a user-selected local NIM. Use for sequence design, backbone redesign, fixed chains and residues, omit_AAs, sampling temperature, soluble model, local Docker, and multi-FASTA output.

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Generate novel drug-like molecules using the GenMol NIM microservice. Use for de novo generation, scaffold decoration, motif extension, lead optimization, SAFE notation, QED or LogP ranking, hosted NVIDIA API calls, or local Docker deployment. GenMol takes SAFE notation in the smiles field, not ordinary SMILES.

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Run DiffDock molecular docking via NVIDIA NIM to predict small-molecule binding poses against protein targets. Use for DiffDock, molecular docking, ligand docking, blind docking, SMILES or SDF ligands, ranked poses, confidence scores, hosted NVIDIA API, or local Docker deployment.

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Finetune a pretrained KERMT encoder on a labeled CSV. Validate the checkpoint and data, prepare features, and run containerized training. Use a local checkpoint or optionally download a pinned Hugging Face model bundle using HF_TOKEN if configured. Write model bundles, prepared data, logs, and trained models to user-selected host directories.

日本語の概要は準備中です。原文の説明を表示しています。