「pipelines」の検索結果

Download large datasets from NCBI efficiently using EPost, history server, batching, rate limiting, and retry logic. Use when bulk-fetching tens of thousands of sequences, pulling all results of a large ESearch, designing reproducible pipelines, comparing E-utilities to NCBI Datasets v2 CLI, or implementing checksum-validated downloads. Encodes WebEnv TTL (~8h), EPost 200-ID limit, retmax caps, parallelization design, and integrity verification.

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Workflow for orchestrating reproducible omics pipelines with workflow engines and clear execution provenance.

日本語の概要は準備中です。原文の説明を表示しています。

Identify direct miRNA-target interactions from AGO HITS-CLIP, AGO-CLEAR-CLIP (chimeric reads), HEAP (Halo-Ago2 mouse), chimeric eCLIP / miR-eCLIP (deep miRNA-target profiling), or CLASH using chimeric-read processing pipelines, seed-pairing analysis, and 3' auxiliary pairing rules. Use when distinguishing direct miRNA targets from indirect, integrating CLIP-derived target maps with TargetScan / miRDB / DIANA predictions, applying canonical 7mer-8mer seed matching with 3' UTR context, or recovering miRNA-mRNA chimeras at scale.

日本語の概要は準備中です。原文の説明を表示しています。

Protein design quality control, filtering thresholds, and ranking guidance. Use this skill when: (1) Evaluating design quality for binding, expression, or structure, (2) Setting filtering thresholds for pLDDT, ipTM, PAE, (3) Checking sequence liabilities (cysteines, deamidation, polybasic clusters), (4) Creating multi-stage filtering pipelines, (5) Computing PyRosetta interface metrics (dG, SC, dSASA), (6) Checking biophysical properties (instability, GRAVY, pI), (7) Ranking designs with composite scoring. This skill provides research-backed thresholds from binder design competitions and published benchmarks.

日本語の概要は準備中です。原文の説明を表示しています。

Browse and install community skills from the BioClaw Skills Hub. Use when a user's task is not covered by built-in skills, or when the user asks about available skills, advanced workflows, or specialized analysis pipelines. Triggers on "skills hub", "more skills", "install skill", "community skills", "find a skill for".

日本語の概要は準備中です。原文の説明を表示しています。

Goal-oriented binder design campaign planning and health assessment. Use this skill when: (1) Planning a complete binder design campaign, (2) Converting high-level goals into runnable pipelines, (3) Assessing campaign health and pass rates, (4) Diagnosing why designs are failing QC, (5) Estimating time, cost, and expected yields, (6) Selecting between design tools for a specific target. This skill orchestrates the other protein design tools. For individual tool parameters, use the specific tool skills.

日本語の概要は準備中です。原文の説明を表示しています。

End-to-end guidance for protein design pipelines. Use this skill when: (1) Starting a new protein design project, (2) Need step-by-step workflow guidance, (3) Understanding the full design pipeline, (4) Planning compute resources and timelines, (5) Integrating multiple design tools. For tool selection, use binder-design. For QC thresholds, use protein-qc.

日本語の概要は準備中です。原文の説明を表示しています。

Binder design campaign planning, monitoring, and troubleshooting. Use this skill when: (1) Planning a complete binder design campaign, (2) Converting high-level goals into runnable pipelines, (3) Assessing campaign health and pass rates, (4) Diagnosing why designs are failing QC, (5) Estimating time, cost, and expected yields, (6) Selecting between design tools for a specific target. This skill orchestrates the other protein design tools. For individual tool parameters, use the specific tool skills.

日本語の概要は準備中です。原文の説明を表示しています。

Quality control metrics and filtering thresholds for protein design. Use this skill when: (1) Evaluating design quality for binding, expression, or structure, (2) Setting filtering thresholds for pLDDT, ipTM, PAE, (3) Checking sequence liabilities (cysteines, deamidation, polybasic clusters), (4) Creating multi-stage filtering pipelines, (5) Computing PyRosetta interface metrics (dG, SC, dSASA), (6) Checking biophysical properties (instability, GRAVY, pI), (7) Ranking designs with composite scoring. This skill provides research-backed thresholds from binder design competitions and published benchmarks.

日本語の概要は準備中です。原文の説明を表示しています。

Extracts executable task definitions from Markdown files and runs them as shell pipelines. Parses fenced code blocks with task metadata annotations and manages dependencies between tasks.

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Implements document chunking, embedding generation, vector storage, and retrieval pipelines for Retrieval-Augmented Generation systems. Use when building RAG applications, creating document Q&A systems, or integrating AI with knowledge bases.

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Use for writing, reviewing, debugging, or testing Pandera schemas and runtime validation for Polars DataFrame or LazyFrame pipelines installed with pandera[polars]. Trigger on pandera.polars DataFrameSchema, DataFrameModel, Column, Field, Check, PolarsData, decorators, coercion, strictness, lazy error collection, and validation-depth decisions. Do not use for pandas-backed Pandera, Pydantic object models, Polars transformations without Pandera, static dataframe typing alone, or generic data-quality platforms.

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Production-grade Python and AI engineering standards. Use for ANY Python work — FastAPI services, LangChain/LangGraph agents, RAG pipelines, LLM API integrations, document processing, or data scripts — whether writing new code, reviewing, refactoring, or debugging. Enforces typed Pydantic boundaries, structured errors and logging, LLM call timeouts/retries/output validation, secret management, async correctness, and tested code.

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Patterns and techniques for evaluating and improving AI agent outputs. Use this skill when: - Implementing self-critique and reflection loops - Building evaluator-optimizer pipelines for quality-critical generation - Creating test-driven code refinement workflows - Designing rubric-based or LLM-as-judge evaluation systems - Adding iterative improvement to agent outputs (code, reports, analysis) - Measuring and improving agent response quality

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Internal — for Boundless team members only. Deploy Boundless infrastructure to a new blockchain. Creates Pulumi stacks, config files, updates ChainId enum, and wires CI/CD pipelines for staging and prod environments. Use when adding a new chain, deploying to a new network, or setting up new chain infrastructure.

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Manage secrets and environment variables using the Doppler CLI. Use when the user wants to set up Doppler, inject secrets into processes, manage projects and configs, upload or download secrets, create service tokens, use secret templates, or integrate Doppler with Docker, Kubernetes, or CI/CD pipelines. Trigger words: doppler, secrets manager, env vars, secret injection, doppler run, doppler setup, service token, secret rotation.

日本語の概要は準備中です。原文の説明を表示しています。

Generate and parse Excel spreadsheets with ExcelJS — create workbooks with multiple sheets, styled cells, formulas, charts, images, and conditional formatting. Use when tasks involve exporting application data to .xlsx, building financial reports, parsing uploaded spreadsheets, or creating data import/export pipelines.

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DuckDB is an in-process analytical database that runs embedded inside your application with zero external dependencies. It can query CSV, Parquet, and JSON files directly without loading them into tables first, making it ideal for local data exploration, ETL pipelines, and analytical workloads where spinning up a server is overkill.

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Configure and use Elasticsearch for full-text search, custom analyzers, aggregations, and index management. Use when a user needs to design search mappings, write complex queries, build aggregation pipelines, tune relevance scoring, or optimize index performance for search workloads.

日本語の概要は準備中です。原文の説明を表示しています。

Real-time face swap and video deepfake using a single source image. Use when: building face-swap applications, real-time video effects, virtual try-on features, AI video effects pipelines.

日本語の概要は準備中です。原文の説明を表示しています。

Automate and script DaVinci Resolve workflows. Use when a user asks to script DaVinci Resolve via Python/Lua API, automate color grading, batch render projects, manage timelines programmatically, automate media import, build render queues, create Fusion compositions via script, automate Fairlight audio processing, manage project databases, build custom tool scripts, or integrate Resolve into production pipelines. Covers the Resolve Scripting API (Python/Lua), Fusion scripting, and workflow automation.

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You are an expert in Crawl4AI, the open-source web crawler built for AI applications. You help developers extract clean, structured data from websites for LLM training, RAG pipelines, and content analysis — with automatic markdown conversion, JavaScript rendering, CSS-based extraction, LLM-powered structured extraction, and session management for multi-page crawling.

日本語の概要は準備中です。原文の説明を表示しています。

Validate data quality in CSV, JSON, and database exports by checking for missing values, type mismatches, duplicates, outliers, and schema violations. Use when building ETL pipelines, auditing data imports, checking data freshness, or ensuring data contracts between teams. Trigger words: data quality, validation, null values, duplicates, schema check, data contract, ETL, pipeline, data drift.

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Assists with end-to-end testing of web applications using Cypress. Use when writing E2E tests, setting up component testing, configuring CI pipelines with parallelization, or building custom test commands. Trigger words: cypress, e2e testing, end-to-end, cypress run, cy.get, integration testing, browser testing.

日本語の概要は準備中です。原文の説明を表示しています。