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概要と使いどころ
Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to
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Provides methods to convert between Python AnnData objects and SingleCellExperiment objects. These are primarily intended for use by downstream Bioconductor packages that wrap Python methods for single-cell data analysis. It also includes f
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Save MultiAssayExperiments to h5mu files supported by muon and mudata. Muon is a Python framework for multimodal omics data analysis. It uses an HDF5-based format for data storage.
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hoodscanR is an user-friendly R package providing functions to assist cellular neighborhood analysis of any spatial transcriptomics data with single-cell resolution. All functions in the package are built based on the SpatialExperiment object, allowing integration into various spatial transcriptomics-related packages from Bioconductor. The package can result in cell-level neighborhood annotation output, along with funtions to perform neighborhood colocalization analysis and neighborhood-based ce
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epigraHMM provides a set of tools for the analysis of epigenomic data based on hidden Markov Models. It contains two separate peak callers, one for consensus peaks from biological or technical replicates, and one for differential peaks from multi-replicate multi-condition experiments. In differential peak calling, epigraHMM provides window-specific posterior probabilities associated with every possible combinatorial pattern of read enrichment across conditions.
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HiContacts provides a collection of tools to analyse and visualize Hi-C datasets imported in R by HiCExperiment.
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Microbiome time series simulation with generalized Lotka-Volterra model, Self-Organized Instability (SOI), and other models. Hubbell's Neutral model is used to determine the abundance matrix. The resulting abundance matrix is applied to (Tree)SummarizedExperiment objects.
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Generates 15-25+ cold outbound campaign ideas with targeting strategies, AI personalization approaches, and value propositions. Use when planning campaign experiments for a client, given their website or business context.
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Optimize pricing pages, pricing models, and pricing strategy. Use when the user asks about pricing, pricing pages, how to price a product, tiered pricing, freemium vs. paid, price testing, pricing psychology, or pricing page design. Trigger phrases include "pricing", "pricing page", "how to price", "pricing strategy", "freemium", "tiered pricing", "per-seat pricing", "usage-based pricing", "pricing experiment", "price anchoring", "pricing psychology", "pricing optimization".
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Generate A/B test variants for affiliate content. Triggers on: "create A/B test", "test my headline", "optimize my CTA", "generate variants", "split test ideas", "improve click-through rate", "test my landing page copy", "headline alternatives", "CTA variations", "which version is better", "optimize conversions", "test my email subject line", "compare approaches".
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Step 1 of the PaperOrchestra pipeline (arXiv:2604.05018). Convert (idea.md, experimental_log.md, template.tex, conference_guidelines.md) into a strict JSON outline containing a plotting plan, literature search plan (Intro + Related Work), and section-level writing plan with citation hints. TRIGGER when the orchestrator delegates Step 1 or when the user asks to "outline a paper from raw materials" or "generate the paper structure".
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Reverse-engineer raw materials (Sparse idea, Dense idea, experimental log) from an existing AI research paper to build a benchmark case for evaluating paper-writing pipelines. Replicates the PaperWritingBench dataset construction procedure from arXiv:2604.05018 §3 / App. C. TRIGGER when the user asks to "build a benchmark case from this paper", "reverse-engineer raw materials", or "evaluate my pipeline against PaperWritingBench".
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Download or open videos and recover platform captions, audio transcripts, keyframes, screen text, visual facts, and editing observations as a plain multimodal_transcript.md. Use for Douyin, Bilibili, YouTube, Xiaohongshu, experimental WeChat Channels links, or local video files when preparing complete source material for analysis or downstream Skill distillation.
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[EXPERIMENTAL] Complex refactoring roadmaps with visual tracking
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Use when the user wants a VALID experiment instead of a guess — hypothesis, one variable, sample size and runtime math, statistical significance, primary versus secondary metrics, multi-arm designs, and a results template, across Optimizely, VWO, and native Meta and Google tests. Trigger on 'A/B test', 'split test', 'how long should I run the test', 'is this result significant', 'test two versions', 'which creative is actually better'. Also use when a winner was declared after two days on tiny numbers. Not for — scaling the proven winner, see `55-scaling-ads-global`; analyzing data already collected, see `13-data-analysis-global`; auditing the account, see `21-ads-audit-global`.
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Use when persuasion principles have to be applied to a specific asset — reciprocity, scarcity, authority, social proof, liking, commitment, and unity mapped onto copy, a landing page, an email, or an ad, each with a hypothesis and a test plan. Trigger on 'marketing psychology', 'Cialdini', 'persuasion principles', 'how do I add urgency', 'make this more convincing', 'behavioral triggers for this page'. Also use when the user asks why people read the whole page and still do not buy. Not for — price framing and margin math, see `17-pricing-strategy-global`; building the offer itself, see `31-offer-design-global`; running the experiment properly, see `19-ab-test-setup-global`.
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Evaluates observed product outcomes against a prior hypothesis; does not run experiments or change user treatment.
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Run an A/B codex review experiment — holistic codex review vs 3 focused dimension passes (security, ecto, liveview) on the branch diff, classify findings, report a panel-value verdict. Use when the branch is fresh, before any codex review runs.
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Track and visualize ML training experiments with Trackio. Use when logging metrics during training (Python API), firing alerts for training diagnostics, or retrieving/analyzing logged metrics (CLI). Supports real-time dashboard visualization, alerts with webhooks, HF Space syncing, and JSON output for automation.
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AI-powered paywall optimizasyon. Sektore gore otomatik analiz, A/B test senaryolari, churn prediction sinyalleri, push notification stratejileri, agresif satis teknikleri ve RevenueCat Experiments entegrasyonu. paywall-strategy, revenuecat-patterns ve subscription-pricing skill'lerinin ustune insa eder.
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Otonom deney dongusu. Kod degisikligi yap, olc, karsilastir, kabul et veya geri al. Metrik bazli karar verme ile performans, boyut veya kalite optimizasyonu. Tek basina veya agent ile kullan.
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Data pipelines, feature stores, and embedding generation for AI/ML systems. Use when building RAG pipelines, ML feature serving, or data transformations. Covers feature stores (Feast, Tecton), embedding pipelines, chunking strategies, orchestration (Dagster, Prefect, Airflow), dbt transformations, data versioning (LakeFS), and experiment tracking (MLflow, W&B).
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Run file-based C# apps with the .NET CLI when the user explicitly wants C#/.NET code without creating a project. Use for C# language/API experiments, one-file C# apps, small multi-file C# apps composed with `#:include`/`#:exclude`, or C# file-based apps linked with `#:ref`. Do not use for language-agnostic throwaway scripts, generic computations, Python/PowerShell-style automation, full projects, or existing app integration.
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Rigorous A/B test statistical analysis. Use when analyzing experiment results, calculating statistical significance, checking for sample ratio mismatch, or validating test design before launch.
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