「curation」の検索結果

Think and work like an expert Biogeographer. Use when a task calls for Biogeographer judgment. Reasons from Wallace's ecological vs historical split through GBIF occurrence curation, blockCV spatial cross-validation, MaxEnt/biomod2 SDMs with MESS extrapolation flags, BioGeoBEARS vicariance/dispersal tests, and phylogeographic coalescence while treating random-CV AUC inflation, background bias, and area-cladogram overfitting as first-class failure modes.

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Queries ClinVar for variant pathogenicity classifications, ClinGen VCEP curations, and somatic-vs-germline interpretations via REST API, weekly VCF, or bulk XML. Use when determining clinical significance, triangulating conflicting interpretations, or aggregating evidence against the ACMG/AMP framework with ClinGen SVI specifications.

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Automated and marker-guided single-cell cell type annotation using CellTypist, marker review, reference transfer, and confidence-aware label curation.

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Audit a whole regression suite and prune/restructure it with evidence: per-test coverage fingerprinting, AST near-duplicate clustering, CI-history mining for never-failing and flaky tests, prune decision rules (redundant/obsolete/low-value/keep), smoke/core/extended tiering by risk and defect-detection history, and a defensible "what we deleted and why" record. Deletion is destructive — quarantine and human sign-off are mandatory. Use when: "audit the test suite," "prune redundant tests," "find duplicate tests," "which tests can we delete," "restructure into smoke/core/extended," "is this test pulling its weight," "shrink the regression suite." Not for: Judging whether an individual test is WELL-WRITTEN (smells, assertions) — that is ai-qa-review. Healing one flaky test at runtime — that is test-reliability. Bulk selector regeneration after a UI refactor — that is selector-drift-recovery. Related: ai-qa-review, coverage-analysis, test-reliability, risk-based-testing, qa-project-context.

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Analyze and categorize Bluesky accounts by topic using keyword extraction. Use when users mention Bluesky account analysis, following/follower lists, topic discovery, account curation, or network analysis.

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RSSフィードからAI・技術系ニュースを選び、本文を確認して要約と注目理由を紹介するスキル。「テックニュース」「最新のニュース教えて」「技術ニュースまとめて」で使用。

Builds LLM pretraining corpora from Common Crawl: extract, filter, deduplicate, decontaminate, mix, synthesize. Use when curating or ablating a pretraining corpus or data pipeline.

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Curating cross-agent knowledge and institutional memory: extracts patterns from agent journals into METAPATTERNS.md, detects knowledge decay, propagates best practices. Use for memory curation.

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Media literacy and critical analysis of media messages across platforms and formats. Covers media ecology (McLuhan), encoding/decoding (Hall), news literacy, digital media analysis, propaganda techniques, algorithmic curation, visual rhetoric, and ethical media consumption. Use when analyzing media messages, evaluating news sources, understanding how media technology shapes communication, detecting propaganda, or studying the relationship between medium and message.

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Use when reviewing, shipping, or regression-testing a SKILL.md and you hold one or more captured trajectories where that skill was actually loaded. Translates the skill's instructions into behavior constraints, then reports which were EXERCISED (coverage) versus untested, and flags any that were in-scope but VIOLATED (compliance) — a cheap single-trajectory test-adequacy gate. It surfaces untested instructions rather than auto-blocking, and escalates fail-closed only when a violation touches shared repo state, never-surface memory, or self-modification. Complements skill-counterfactual-audit (which measures EFFECT) and skill-causal-curation (which measures contribution); this one asks ADEQUACY. Backed by the agent-skill-coverage metric (arxiv 2606.20659v2). Triggers on skill review, ship gating, and regression-testing a skill against its trajectories.

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Analyze the sentiment or mood conveyed by an image with a local vision LLM. Wraps kuzco's tool_llm_image_sentiment() ellmer tool. Use when the task needs the emotional tone of an image, e.g. for content moderation, marketing, or curation.

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Build and maintain a library collection through acquisitions, weeding (deaccessioning), collection assessment, reader advisory, and interlibrary loan coordination. Covers selection criteria, collection development policies, the CREW/MUSTIE method for weeding, usage analysis, and responsive collection management. Use when building a new collection with a defined scope and budget, assessing an existing collection for gaps or outdated materials, when shelves are overcrowded and systematic weeding is needed, or when establishing a formal collection development policy.

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Collect and preserve insect specimens following museum-grade standards including legal compliance, collection methods, humane dispatch, dry pinning, wet preservation, labeling, storage, and curation. Covers permit requirements, protected species regulations, sweep nets, beating trays, pitfall traps, light traps, Malaise traps, aspirators, ethyl acetate killing jars, freezing, pin placement by order, wing spreading, ethanol preservation for soft-bodied specimens, specimen labeling with locality and date, storage with pest management, and database entry. Use when building a reference collection for taxonomic study, preserving voucher specimens for ecological research, preparing specimens for identification by specialists, or curating an existing collection.

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Export top-level ai-gene-review `proposed_new_terms` entries to a deterministic TSV table.

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Use this agent when you need to extract and summarize key findings from scientific references that are relevant to a gene's function. This agent should be used after references have been identified in a gene review to provide detailed supporting evidence from the literature. The agent will look up cached publications and extract only the most relevant findings related to the gene's direct function, excluding irrelevant experimental details unless they directly inform gene function.

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Use this agent when you need to create a pathway summary for a gene after completing the main gene review. This agent should be invoked specifically to generate GENE-pathway.md files that summarize the gene's role in biological pathways with proper citations and mermaid diagrams.

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Use when running or wiring OpenScientist for AI Gene Review gene-function hypotheses, especially blinded comparisons against local bioinformatics analyses.

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Review computational protein or gene function predictions and fill PredictionReview YAML files using the COR/CNN/LSP/UNC/PLI/NPI/REP biological-validity taxonomy. Use for ProtNLM, DeepECTF, BioReason/GO-GPT, InterPro2GO, PANTHER/IBA, CLEAN, GloEC, MAPred, ProteinInfer, or other predicted EC/GO annotations, including audits of the evidence and reasoning in existing prediction reviews.

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Use this agent when you need to synthesize and distill the core functions of a gene from multiple information sources (textual summaries, reviewed annotations, bioinformatics analysis) and populate the `core_functions` section of a gene review YAML file. This agent should be called after completing the gene research, annotation review, and bioinformatics analysis phases of a gene review project.

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Use ONLY when the user explicitly asks to orchestrate parallel external agents (Codex or Claude Code) in tmux sessions via tp (tmux-pilot). Or when a user tells you that you're the boss or orchestrator. You can also use this if you are an operclaw agent. NEVER auto-invoke for a generic "do this in parallel" request. For in-process subagents, use superpowers:dispatching-parallel-agents instead.

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Work with BioReason-Pro predictions and reasoning traces for protein function. Use when: comparing BioReason outputs against curated reviews, converting web exports to YAML, reviewing reasoning trace quality, or running the SFT/RL comparison. Triggers: "bioreason", "GO-GPT predictions", "reasoning trace review", "bioreason comparison", "SFT vs RL".

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Use this agent when you need to perform custom bioinformatics analyses on genes or proteins that go beyond standard database lookups. This includes situations where existing domain/family annotations from UniProt are insufficient, when you need to verify dubious annotations, or when you need to perform comparative analyses across gene sets. The agent creates reproducible analysis pipelines with proper dependency management and documentation.

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Review, either de-novo, or augment the review of an existing one. A list of deep research providers may be specified.

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Manage and drive forward an ongoing project, tracked in projects/ dir

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