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概要と使いどころ
Extracts and preprocesses whole-slide histology image tiles with Histolab. Use for WSI inspection, tissue masks, random/grid/score-based tile extraction, H&E stain normalization, and tile dataset preparation. For multiplexed imaging or deep learning inference pipelines, use pathml.
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Authors, reviews, migrates, simulates, and troubleshoots official Opentrons Python Protocol API v2 protocols for Flex and OT-2 robots. Use for robot-specific liquid handling, deck and labware setup, pipettes, modules, runtime parameters, liquid classes, and Opentrons App analysis. Use pylabrobot instead when one workflow must support multiple robot vendors.
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Resolves free-text scientific labels to ontology term IDs and validates existing CURIEs against the EBI Ontology Lookup Service (OLS4). Also looks up prefixes in Bioregistry, resolves compact identifiers via Identifiers.org, maps lab shorthand with ZOOMA, and builds Ontobee term pages. Use whenever an ontology identifier must be produced or checked - annotating tissue, cell type, disease, phenotype, assay, chemical, organism, sex, or developmental stage fields; preparing metadata for GEO, ENA, BioSamples, CELLxGENE, HCA, or ISA-Tab submission; auditing a metadata table of term IDs; checking whether a term is obsolete and what replaced it; or deciding HPO vs HP. Triggers include "ontology term", "ontology ID", "CURIE", "controlled vocabulary", "UBERON", "CL:", "MONDO", "HPO", "EFO", "ChEBI", "NCBITaxon", "GO term", "PATO", "Zooma", "Bioregistry", "Identifiers.org", "Ontobee", "annotate this tissue/cell type/disease", and any request to emit or verify an identifier shaped like PREFIX:0001234.
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Estimates intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing measurements using validated atom maps, mfapy isotope simulation, constrained multistart fitting, and flux-profile diagnostics. Use for 13C-MFA, carbon tracing, mass isotopomer distributions (MDVs/MIDs), positional isotopomers, parallel tracer experiments, and determining whether labeling data constrain a pathway flux. Distinguishes measured-label inference from COBRA flux balance analysis and flags experiments requiring nonstationary MFA.
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Use when the user asks about GitNexus itself — available tools, how to query the knowledge graph, MCP resources, graph schema, or workflow reference. Examples: "What GitNexus tools are available?", "How do I use GitNexus?"
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Interactive onboarding tour for the context-matic MCP server. Walks the user through what the server does, shows all available APIs, lets them pick one to explore, explains it in their project language, demonstrates model_search and endpoint_search live, and ends with a menu of things the user can ask the agent to do. USE FOR: first-time setup; "what can this MCP do?"; "show me the available APIs"; "onboard me"; "how do I use the context-matic server"; "give me a tour". DO NOT USE FOR: actually integrating an API end-to-end (use integrate-context-matic instead).
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Locks customer-facing CopilotKit Intelligence docs to one approved name per concept. Use when writing, editing, or reviewing Intelligence docs, nav labels, signup labels, or image alt text in showcase/shell-docs. Don't use for renaming code identifiers, route slugs, env vars, API fields, or component names, or for docs that do not mention Intelligence.
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Helps users discover and install agent skills when they ask questions like "how do I do X", "find a skill for X", "is there a skill that can...", or express interest in extending capabilities. This skill should be used when the user is looking for functionality that might exist as an installable skill.
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Identify poisoned training data and backdoored ML models across the pipeline using IBM's Adversarial Robustness Toolbox (activation clustering, spectral signatures, trigger reconstruction), Cleanlab for label-quality issues, and supply-chain checks like weight-hash verification and safetensors enforcement. Use before training or deploying on third-party/user-contributed data or downloaded checkpoints, during ML supply-chain reviews, or when investigating model misbehavior tied to specific inputs (suspected backdoor trigger).
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Collects and synthesizes open-source intelligence (OSINT) about threat actors, malicious infrastructure, and attack campaigns using publicly available data sources, passive reconnaissance tools, and dark web monitoring. Use when investigating external threat actor infrastructure, performing pre-engagement reconnaissance for authorized red team assessments, or enriching CTI reports with publicly available adversary context. Activates for requests involving Maltego, Shodan, OSINT framework, SpiderFoot, or infrastructure reconnaissance.
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Build collaborative forensic incident timelines using Timesketch to ingest, normalize, and analyze multi-source event data (including Plaso output) for attack chain reconstruction and investigation documentation. Use when reconstructing the sequence of events during an incident investigation or when multiple analysts need to jointly tag, annotate, and search a shared DFIR timeline.
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Reserved and on-demand GPU cloud instances for ML training and inference. Use when you need dedicated GPU instances with simple SSH access, persistent filesystems, or high-performance multi-node clusters for large-scale training.
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Track ML experiments with automatic logging, visualize training in real-time, optimize hyperparameters with sweeps, and manage model registry with W&B - collaborative MLOps platform
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Scalable data processing for ML workloads. Streaming execution across CPU/GPU, supports Parquet/CSV/JSON/images. Integrates with Ray Train, PyTorch, TensorFlow. Scales from single machine to 100s of nodes. Use for batch inference, data preprocessing, multi-modal data loading, or distributed ETL pipelines.
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Daily digest of AI releases from Anthropic, Meta, Vercel Labs, OpenAI and Google GitHub repos, the Claude Cowork changelog, the claude.dev blog and Hacker News, deduplicated against a local state file and sent by email. Use when the user asks for a daily AI news digest, to scan AI labs for new releases, or to set up a scheduled release-hunter job.
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Find Gmail messages with a specific label and forward them to another address.
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Apply Gmail labels to matching messages and archive them to keep your inbox clean.
日本語の概要は準備中です。原文の説明を表示しています。
Expert prompt engineering skill that transforms Claude into "Alpha-Prompt" - a master prompt engineer who collaboratively crafts high-quality prompts through flexible dialogue. Activates when user asks to "optimize prompt", "improve system instruction", "enhance AI instruction", or mentions prompt engineering tasks.
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Turns a plain-English description of a recurring report into a real, repeatable report — defines the metrics, pulls them from whatever data sources are connected, delivers a chat summary plus an XLSX workbook, and saves the definition so the same report reruns on demand or on a schedule. Handles anything from "sales by location versus last year" to AR aging to labor as a percentage of revenue. Works fully from an uploaded CSV or XLSX when no connector is available. Use this whenever the owner asks for a report, dashboard, KPI pack, metrics summary, or recurring numbers — including phrasings like "can you track this every week," "I need to see these numbers monthly," "build me a report on," "same report as last time," or "put together a KPI dashboard." Reach for it even when the owner names the metrics without using the word report.
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Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis. Supports auto-detection of instrument types. Outputs include full ASM JSON, flattened CSV for easy import, and exportable Python code for data engineers. Common triggers include converting instrument files, standardizing lab data, preparing data for upload to LIMS/ELN systems, or generating parser code for production pipelines.
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Set up your bio-research environment and explore available tools. Use when first getting oriented with the plugin, checking which literature, drug-discovery, or visualization MCP servers are connected, or surveying available analysis skills before starting a new project.
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Maintain the supported LLM model list: add a new model, or run routine maintenance to verify availability and discover new models worth adding. Use when the user asks to add/support a model, update the model list, or check model availability.
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Review a GitLab merge request for a Factory work item using brokered source-control tools
日本語の概要は準備中です。原文の説明を表示しています。
Re-review a GitLab merge request after new commits and reconcile the previous review
日本語の概要は準備中です。原文の説明を表示しています。