「code mode」の検索結果

Install and configure ToolUniverse for any use case — MCP server (chat-based), CLI (command line with 9 subcommands), or Python SDK (Coding API with 3 calling patterns). Covers uv/uvx setup, MCP configuration for 12+ AI clients (Cursor, Claude Desktop, Windsurf, VS Code, Codex, Gemini CLI, Trae, Cline, etc.), full CLI reference (tu list/grep/find/info/run/test/status/build/serve), Coding API quickstart, agentic tools, code executor, API key walkthrough, skill installation, and upgrading. Use when user asks how to set up ToolUniverse, which access mode to use (MCP vs CLI vs SDK), configuring MCP servers, using the CLI, troubleshooting installation, upgrading, or mentions installing ToolUniverse or setting up scientific tools. Also triggers for "how do I use ToolUniverse", "what's the best way to access tools", "command line", "tu command", "coding API", "tu build".

日本語の概要は準備中です。原文の説明を表示しています。

Survey a codebase's animation and motion code as a senior motion advisor, then produce a prioritized audit and self-contained implementation plans for other agents (or cheaper models) to execute. Read-only on source code — it plans improvements, it does not apply them. Use when the user asks to "improve the animations", "audit the motion", "make this app feel better", or wants a roadmap of animation fixes rather than a review of a single diff.

日本語の概要は準備中です。原文の説明を表示しています。

Google Workspace CLI (gws) リファレンス。Rust 製。 `gws <service> <resource> <method>` 形式で Gmail / Drive / Calendar / Sheets / Docs / Chat 等 19 サービスを統一操作。Google Discovery Service 経由の動的コマンド生成。 `+` プレフィックスのヘルパーコマンド（+send, +agenda, +upload, +triage 等）、 ワークフロー合成（+standup-report, +meeting-prep, +weekly-digest）、 OAuth / サービスアカウント / CI ヘッドレス認証、env vars / .env / keyring 設定、 グローバルフラグ（--dry-run, --page-all, --sanitize）、exit codes、Model Armor 統合。

Predict B-cell and T-cell epitopes for vaccine antigen design and epitope mapping with BepiPred-3.0, DiscoTope-3.0, the IEDB tools, and EL-mode MHC presentation. Encodes the load-bearing asymmetry that T-cell epitope prediction is mature (it reduces to MHC presentation, AUC>0.9) while B-cell prediction is unreliable (linear predictors ~AUC 0.6 because ~90% of real epitopes are conformational) — so structure-based DiscoTope-3.0 on AlphaFold models is the only defensible B-cell path, propensity scales are obsolete, and NetChop is largely redundant on EL-trained models. Use when mapping epitopes or selecting vaccine antigens. MHC binding lives in mhc-binding-prediction.

日本語の概要は準備中です。原文の説明を表示しています。

Detect positive (diversifying / episodic / pervasive) selection using codon dN/dS frameworks. Implements PAML codeml site models (M0/M1a/M2a/M7/M8/M8a), branch models, branch-site model A (Zhang 2005), and HyPhy methods (BUSTED, BUSTED-S, BUSTED-MH, BUSTED-PH, MEME, FEL, FUBAR, aBSREL, SLAC, RELAX, GARD, FUBAR-MH). Includes McDonald-Kreitman framework (asymptotic alpha, impMKT, polyDFE, DFE-alpha, GRAPES) for within-species + divergence inference, RERconverge for trait-correlated rate shifts, CSUBST for convergent substitution, and PhyloAcc for accelerated noncoding evolution. Use when testing adaptive evolution at codons, branches, or full gene; running GARD recombination pre-screen; controlling alignment-error and gBGC false positives; reconciling PAML vs HyPhy results; or performing genome-scale selection scans.

日本語の概要は準備中です。原文の説明を表示しています。

Detects aberrant splicing in single rare-disease patients vs a control panel using FRASER 2.0 (Bioconductor; Beta-binomial autoencoder on Intron Jaccard Index, default delta cutoff 0.1, q hyperparameter), OUTRIDER (gene-level outlier expression via autoencoder denoising), LeafcutterMD (Dirichlet-multinomial outlier mode of LeafCutter for annotation-free junctions), and DROP (Snakemake pipeline integrating FRASER2 + OUTRIDER + monoallelic expression for clinical diagnostics). The statistical model is fundamentally different from differential splicing — single-sample-vs-cohort outlier detection rather than two-group comparison. Standard tool in EU rare-disease (Solve-RD) and NIH UDN programs. Use when applying RNA-seq to undiagnosed Mendelian disease, validating predicted splice variants in clinical samples, or detecting cryptic splicing in disease tissue.

日本語の概要は準備中です。原文の説明を表示しています。

Convert Claude markdown subagent files to Codex CLI TOML format. Parses YAML frontmatter and body, applies model/permission/tool mappings, and outputs to agents/codex/<name>.toml.

日本語の概要は準備中です。原文の説明を表示しています。

Guarantee valid JSON/XML/code structure during generation, use Pydantic models for type-safe outputs, support local models (Transformers, vLLM), and maximize inference speed with Outlines - dottxt.ai's structured generation library

日本語の概要は準備中です。原文の説明を表示しています。

Provides guidance for training and analyzing Sparse Autoencoders (SAEs) using SAELens to decompose neural network activations into interpretable features. Use when discovering interpretable features, analyzing superposition, or studying monosemantic representations in language models.

日本語の概要は準備中です。原文の説明を表示しています。

Write type-safe TypeScript code with strict mode enabled, comprehensive type definitions, proper error handling, and elimination of any types. Use when enabling TypeScript strict mode, adding types to existing JavaScript, fixing type errors, creating type definitions, using utility types, implementing type guards, avoiding any types, creating generic types, or ensuring complete type safety across the codebase.

日本語の概要は準備中です。原文の説明を表示しています。

Establish and enforce coding standards, best practices, and architectural patterns across the codebase using linters, formatters, and code review processes. Use when setting up ESLint/Prettier, configuring linting rules, creating code style guides, implementing pre-commit hooks, establishing naming conventions, enforcing TypeScript strict mode, maintaining consistency, conducting architecture reviews, or defining team coding standards.

日本語の概要は準備中です。原文の説明を表示しています。

YC Office Hours — two modes. Startup mode: six forcing questions that expose demand reality, status quo, desperate specificity, narrowest wedge, observation, and future-fit. Builder mode: design thinking brainstorming for side projects, hackathons, learning, and open source. Saves a design doc. Use when asked to "brainstorm this", "I have an idea", "help me think through this", "office hours", or "is this worth building". Proactively invoke this skill (do NOT answer directly) when the user describes a new product idea, asks whether something is worth building, wants to think through design decisions for something that doesn't exist yet, or is exploring a concept before any code is written. Use before /plan-ceo-review or /plan-eng-review. (gstack)

日本語の概要は準備中です。原文の説明を表示しています。

Predict B-cell and T-cell epitopes for vaccine antigen design and epitope mapping with BepiPred-3.0, DiscoTope-3.0, the IEDB tools, and EL-mode MHC presentation. Encodes the load-bearing asymmetry that T-cell epitope prediction is mature (it reduces to MHC presentation, AUC>0.9) while B-cell prediction is unreliable (linear predictors ~AUC 0.6 because ~90% of real epitopes are conformational) — so structure-based DiscoTope-3.0 on AlphaFold models is the only defensible B-cell path, propensity scales are obsolete, and NetChop is largely redundant on EL-trained models. Use when mapping epitopes or selecting vaccine antigens. MHC binding lives in mhc-binding-prediction.

日本語の概要は準備中です。原文の説明を表示しています。

Detect positive (diversifying / episodic / pervasive) selection using codon dN/dS frameworks. Implements PAML codeml site models (M0/M1a/M2a/M7/M8/M8a), branch models, branch-site model A (Zhang 2005), and HyPhy methods (BUSTED, BUSTED-S, BUSTED-MH, BUSTED-PH, MEME, FEL, FUBAR, aBSREL, SLAC, RELAX, GARD, FUBAR-MH). Includes McDonald-Kreitman framework (asymptotic alpha, impMKT, polyDFE, DFE-alpha, GRAPES) for within-species + divergence inference, RERconverge for trait-correlated rate shifts, CSUBST for convergent substitution, and PhyloAcc for accelerated noncoding evolution. Use when testing adaptive evolution at codons, branches, or full gene; running GARD recombination pre-screen; controlling alignment-error and gBGC false positives; reconciling PAML vs HyPhy results; or performing genome-scale selection scans.

日本語の概要は準備中です。原文の説明を表示しています。

Detects aberrant splicing in single rare-disease patients vs a control panel using FRASER 2.0 (Bioconductor; Beta-binomial autoencoder on Intron Jaccard Index, default delta cutoff 0.1, q hyperparameter), OUTRIDER (gene-level outlier expression via autoencoder denoising), LeafcutterMD (Dirichlet-multinomial outlier mode of LeafCutter for annotation-free junctions), and DROP (Snakemake pipeline integrating FRASER2 + OUTRIDER + monoallelic expression for clinical diagnostics). The statistical model is fundamentally different from differential splicing — single-sample-vs-cohort outlier detection rather than two-group comparison. Standard tool in EU rare-disease (Solve-RD) and NIH UDN programs. Use when applying RNA-seq to undiagnosed Mendelian disease, validating predicted splice variants in clinical samples, or detecting cryptic splicing in disease tissue.

日本語の概要は準備中です。原文の説明を表示しています。

Apple FoundationModelsフレームワークによるオンデバイスLLM — テキスト生成、@Generableによるガイド生成、ツール呼び出し、iOS 26+でのスナップショットストリーミング。

Provides guidance for training and analyzing Sparse Autoencoders (SAEs) using SAELens to decompose neural network activations into interpretable features. Use when discovering interpretable features, analyzing superposition, or studying monosemantic representations in language models.

日本語の概要は準備中です。原文の説明を表示しています。

Operating discipline distilled from Claude Fable 5 for sessions and subagents on weaker models (Opus 4.x, Sonnet 5/4.x, Haiku 4.5) doing agentic coding. Load it at the START of any non-trivial task when not running on Fable 5: debugging, refactoring, changes across 2+ files, or unfamiliar code; and instruct a subagent on Opus/Sonnet/Haiku to read this skill with a non-trivial assignment. Triggers include "think like Fable", "fable-mode", "turn on discipline", "work carefully", dispatching a subagent on a weaker model, and repeated mistakes or rework in the session. NOT needed for trivial edits (rename, typo, one-liner) or purely conversational answers.

日本語の概要は準備中です。原文の説明を表示しています。

[Extended thinking: This workflow implements a sophisticated debugging and resolution pipeline that leverages AI-assisted debugging tools and observability platforms to systematically diagnose and resolve production issues. The intelligent debugging strategy combines automated root cause analysis with human expertise, using modern 2024/2025 practices including AI code assistants (GitHub Copilot, Claude Code), observability platforms (Sentry, DataDog, OpenTelemetry), git bisect automation for ...

日本語の概要は準備中です。原文の説明を表示しています。

Refactor legacy codebases, migrate outdated frameworks, and implement gradual modernization. Handles technical debt, dependency updates, and backward compatibility. Use PROACTIVELY for legacy system updates, framework migrations, or technical debt reduction.

日本語の概要は準備中です。原文の説明を表示しています。

Build production ML systems with PyTorch 2.x, TensorFlow, and modern ML frameworks. Implements model serving, feature engineering, A/B testing, and monitoring. Use PROACTIVELY for ML model deployment, inference optimization, or production ML infrastructure.

日本語の概要は準備中です。原文の説明を表示しています。

Expert data scientist for advanced analytics, machine learning, and statistical modeling. Handles complex data analysis, predictive modeling, and business intelligence. Use PROACTIVELY for data analysis tasks, ML modeling, statistical analysis, and data-driven insights.

日本語の概要は準備中です。原文の説明を表示しています。

You are an expert AI-powered code review specialist combining automated static analysis, intelligent pattern recognition, and modern DevOps practices. Leverage AI tools (GitHub Copilot, Qodo, GPT-5, Claude 4.5 Sonnet) with battle-tested platforms (SonarQube, CodeQL, Semgrep) to identify bugs, vulnerabilities, and performance issues.

日本語の概要は準備中です。原文の説明を表示しています。

Survey a codebase's animation and motion code as a senior motion advisor, then produce a prioritized audit and self-contained implementation plans for other agents (or cheaper models) to execute. Read-only on source code — it plans improvements, it does not apply them. Use when the user asks to "improve the animations", "audit the motion", "make this app feel better", or wants a roadmap of animation fixes rather than a review of a single diff.

日本語の概要は準備中です。原文の説明を表示しています。