「workflow」の検索結果

Builds and applies 3D pharmacophore models using RDKit Pharm3D, the apo2ph4 receptor-based workflow (Heider et al 2022/2023 J Chem Inf Model 63:147-158), Pharmer / Pharmit (search), and PharmacoForge (diffusion-based generation, Flynn et al 2025 Front Bioinform), covering ligand-based pharmacophore (from active set alignment) and receptor-based pharmacophore (from binding pocket geometry). Explicit handling of feature types, geometric tolerances, partial matching, and pharmacophore-based virtual screening. Use when identifying scaffold-hopping candidates, building shape-and-feature search queries, or transferring SAR across chemotypes.

日本語の概要は準備中です。原文の説明を表示しています。

Performs ML-based protein-ligand pose prediction and scoring using DiffDock-L (diffusion-based), Boltz-1 / Boltz-2 (foundation model with affinity), Chai-1, AlphaFold3 ligand, EquiBind, TANKBind, NeuralPLexer, and hybrid workflows (DiffDock pose + GNINA rescore + PoseBusters QC). Explicit handling of when ML beats classical docking, when classical beats ML, the PB-invalid pose problem, and rescoring as the standard production hybrid. Use when modern docking is needed: foundation-model ligand-pose prediction, AI rescoring of classical poses, or scaffold-hopping in cross-docking scenarios.

日本語の概要は準備中です。原文の説明を表示しています。

Designs PROTACs, molecular glues, and bivalent degraders with explicit handling of E3 ligase choice (VHL, CRBN, IAP, MDM2, KEAP1), linker design (length, composition, rigidity), ternary complex prediction (PRosettaC, DeepTernary, AlphaFold3 with constraints), cooperativity (alpha), DC50 / Dmax characterization, hook effect, and prediction-experiment reconciliation. Use when designing targeted protein degraders, planning linker SAR, predicting ternary complex stability, or building generative degrader workflows.

日本語の概要は準備中です。原文の説明を表示しています。

Audit required bioinformatics command-line tools against Lmod or Environment Modules on Linux HPC clusters, resolve executable and version requirements, and reproducibly deploy missing software through a site-approved EasyBuild, Spack, Bioconda/micromamba, Apptainer, binary, or source-build workflow. Use when Codex must inspect module availability, diagnose a missing or wrong-version bioinformatics tool, install scientific software on Slurm/PBS clusters, publish or validate modulefiles, or produce an auditable and rollback-ready cluster software deployment.

日本語の概要は準備中です。原文の説明を表示しています。

CodeConductor pagespeed workflow

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Run the API contract workflow for public interface changes, compatibility constraints, contract tests, documentation, and review.

日本語の概要は準備中です。原文の説明を表示しています。

Maps incoming work to the CodeConductor slash command and workflow skill. Use when starting a session or deciding which /cc-* command applies.

日本語の概要は準備中です。原文の説明を表示しています。

Design, implement, and review web interface layout, component states, feedback, and motion within the current CodeConductor workflow. Use for concrete web UI work or requested UI audits, not backend-only tasks or native mobile apps.

日本語の概要は準備中です。原文の説明を表示しています。

Guides the creation of complete Spring Boot features following a structured, layer-by-layer workflow: entity, repository, service, controller, and tests. Applies Kotlin idioms, Bean Validation, and MockK test patterns throughout.

日本語の概要は準備中です。原文の説明を表示しています。

Council-driven workflow with CCEP-1 bootstrap

日本語の概要は準備中です。原文の説明を表示しています。

Run the authorized defensive security workflow — domain security-* skills, authorization gate, risk-based routing, hardening, and review.

日本語の概要は準備中です。原文の説明を表示しています。

Run the advanced iterative workflow — Wayfinding AST discovery, Relentless Grilling, contract and spec design, TDD, council review, and docs.

日本語の概要は準備中です。原文の説明を表示しています。

Guides agents through scorecards, outcomes, model profiles, and eval suites. Use when running /cc-scorecard or /cc:scorecard, measuring a deliverable, or checking workflow gates with suite-run.

日本語の概要は準備中です。原文の説明を表示しています。

Provides and generates complete CRUD workflows for Spring Boot 3 services. Creates feature-focused architecture with Spring Data JPA aggregates, repositories, DTOs, controllers, and REST APIs. Validates domain invariants and transaction boundaries. Use when modeling Java backend services, REST API endpoints, database operations, web service patterns, or JPA entities for Spring Boot applications.

日本語の概要は準備中です。原文の説明を表示しています。

Provides expert knowledge for designing, implementing, and managing REST API versioning strategies with deprecation workflows.

日本語の概要は準備中です。原文の説明を表示しています。

Run the refactor workflow — mandatory architectural justification, test verification, risk-based implementation, and scope enforcement.

日本語の概要は準備中です。原文の説明を表示しています。

Run the full feature workflow — task validation, technical design, implementation, testing, review, and documentation.

日本語の概要は準備中です。原文の説明を表示しています。

Run the bug fix workflow — risk-based routing through task validation, implementation, testing, and optional review.

日本語の概要は準備中です。原文の説明を表示しています。

Run the API contract workflow for request/response shape changes, compatibility constraints, contract tests, documentation, and review.

日本語の概要は準備中です。原文の説明を表示しています。

Run the database migration workflow for schema/data changes, operational sequencing, tests, and review.

日本語の概要は準備中です。原文の説明を表示しています。

Inventory staged local EcoSIM data at project startup and validate input readiness for a selected site, simulation period, and preprocessing or analysis workflow. Use before data-dependent work or when relevant inputs change.

日本語の概要は準備中です。原文の説明を表示しています。

Bash scripting workflow for creating production-ready shell scripts with defensive patterns, error handling, and testing.

日本語の概要は準備中です。原文の説明を表示しています。

Build server-side call automation workflows including IVR systems, call routing, recording, and AI-powered interactions.

日本語の概要は準備中です。原文の説明を表示しています。

Ask which skill or flow fits your situation. A router over the user-invoked skills in this repo.

日本語の概要は準備中です。原文の説明を表示しています。