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概要と使いどころ
GRN inference from expression via GRNBoost2 (gradient boosting) or GENIE3 (Random Forest). Load matrix, filter by TFs, infer TF-target-importance links, save network. Dask-parallelized to single-cell scale. Core SCENIC component.
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AiZynthFinder retrosynthetic route planning (CASP) from AstraZeneca Molecular AI. Monte Carlo tree search guided by a template-based neural expansion policy recursively disconnects a target SMILES until precursors are found in a purchasable stock. Covers config.yml (v4 format), aizynthcli batch screening, the AiZynthFinder/AiZynthExpander Python API, one-step disconnections, custom stocks via smiles2stock, scorers, Retro*/breadth-first/DFPN search alternatives, and reading output.json.gz / trees.json. Use for synthesis route planning, synthesizability screening, and building-block/precursor search. For reaction barriers use neb-irc-activation-energy; for 2D reaction scheme drawing use rdkit-chemdraw-cdxml.
日本語の概要は準備中です。原文の説明を表示しています。
Search and retrieve preprints from arXiv via the Atom API. Use this skill when searching for papers in physics, mathematics, computer science, quantitative biology, quantitative finance, statistics, electrical engineering, or economics by keywords, authors, arXiv IDs, date ranges, or categories.
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Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.
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Access AlphaFold DB's 200M+ predicted structures by UniProt ID. Download PDB/mmCIF, analyze pLDDT/PAE, bulk-fetch proteomes via Google Cloud. For experimental structures use PDB; for prediction use ColabFold or ESMFold.
日本語の概要は準備中です。原文の説明を表示しています。
Systematic writing framework for philosophy and interdisciplinary academic papers from optimized outline to submission-ready manuscript. Use when users want to: (1) write a paper from a detailed outline, (2) ensure quality control during writing, (3) maintain consistency across chapters, (4) prepare a submission-ready manuscript, or (5) systematically execute a planned paper. Triggered by phrases like 'write the paper from this outline,' 'compose the full manuscript,' 'execute the outline,' or when users have completed strategic planning (academic-paper-strategist skill) and are ready to write. Takes optimized outline as input; outputs complete manuscript with iterative quality checks.
日本語の概要は準備中です。原文の説明を表示しています。
Systematic strategic planning framework for philosophy and interdisciplinary academic papers targeting preprint platforms (PhilArchive, arXiv, PhilSci-Archive). Use when users want to: (1) plan a paper on a specific topic, (2) identify research gaps and assess originality, (3) develop optimized paper outlines, (4) prepare for preprint submission, or (5) understand platform requirements and writing standards. Triggered by phrases like 'plan a paper on,' 'help me design a paper about,' 'identify research gaps in,' 'is this idea original,' or when users need structured research planning. The skill guides through three phases: Platform Analysis (identifying target venue and studying sample papers), Theoretical Framework (AI-driven literature search and gap identification), and Outline Optimization (structured design with reviewer-perspective self-assessment). Each phase includes quality evaluation standards and validation checkpoints.
日本語の概要は準備中です。原文の説明を表示しています。
AI-powered codebase security scanner that reasons about code like a security researcher — tracing data flows, understanding component interactions, and catching vulnerabilities that pattern-matching tools miss. Use this skill when asked to scan code for security vulnerabilities, find bugs, check for SQL injection, XSS, command injection, exposed API keys, hardcoded secrets, insecure dependencies, access control issues, or any request like "is my code secure?", "review for security issues", "audit this codebase", or "check for vulnerabilities". Covers injection flaws, authentication and access control bugs, secrets exposure, weak cryptography, insecure dependencies, and business logic issues across JavaScript, TypeScript, Python, Java, PHP, Go, Ruby, and Rust.
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Execute implementation plan by dispatching fresh subagent for each task, with code review between tasks
日本語の概要は準備中です。原文の説明を表示しています。
Postgres best practices maintained by Supabase, for Postgres running anywhere. Load this skill BEFORE writing or changing anything that lives in a Postgres database: creating or altering tables and columns (including choosing column types), schema design, migrations and declarative schema files, RLS policies and the tests that verify them, indexes, triggers, database functions, queues and scheduled jobs (pg_cron, pgmq), vector/semantic search (pgvector), and restoring dumps (pg_restore) or importing data. Also load it when diagnosing slow queries, high CPU, timeouts, EXPLAIN plans, connection exhaustion, locking, bloat, or rows visible to the wrong user or tenant. This is not just a performance guide — schema, migration, security, and SQL authoring tasks need these rules too, even for a one-column change or a single query.
日本語の概要は準備中です。原文の説明を表示しています。
Perform language and framework specific security best-practice reviews and suggest improvements. Trigger only when the user explicitly requests security best practices guidance, a security review/report, or secure-by-default coding help. Trigger only for supported languages (python, javascript/typescript, go). Do not trigger for general code review, debugging, or non-security tasks.
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Convert an existing frontend into Stitch-ready design assets by extracting static HTML, writing DESIGN.md, creating the design system, and uploading approved files.
日本語の概要は準備中です。原文の説明を表示しています。
Transform, resize, crop, reformat, and optimize images on demand via Netlify Image CDN's /.netlify/images endpoint. Use when adding responsive images, generating thumbnails, converting formats (avif/webp/png), cropping to aspect ratios, tuning image quality, creating blurred placeholders, allowlisting remote image domains, serving user-uploaded images, or wiring framework image components (Next.js, Astro, Nuxt, Angular, Gatsby) to Netlify. Triggers on tasks like "optimize images", "add image thumbnails", "resize images on the fly", "serve images from an external domain", or "add blur placeholders".
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MongoDB schema design patterns and anti-patterns. Use when designing data models, reviewing schemas, migrating from SQL, or troubleshooting performance issues caused by schema problems. Triggers on "design schema", "embed vs reference", "MongoDB data model", "schema review", "unbounded arrays", "one-to-many", "tree structure", "16MB limit", "schema validation", "JSON Schema", "time series", "schema migration", "polymorphic", "TTL", "data lifecycle", "archive", "index explosion", "unnecessary indexes", "approximation pattern", "document versioning".
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Deploy and configure web frameworks on Netlify — build settings and SSR/edge adapters plus local platform emulation and env vars. Use when setting up or fixing a framework deploy (Next.js / Astro / Nuxt / SvelteKit / Remix / React Router / TanStack Start / SolidStart / Gatsby / Angular / Vite / Express / Hydrogen / Hugo / Eleventy / Vue / React), adding SSR or edge functions or middleware wired to Netlify context, fixing SPA redirect and catch-all rules, setting a build command or publish directory, or debugging "why isn't my env var updating" and framework build failures.
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Add authentication and user management to a Netlify site with @netlify/identity — signup/login/logout, OAuth social login (Google/GitHub/GitLab/Bitbucket), server-side user verification in Functions, role-based access control (RBAC), admin user management, and Identity event hooks. Use when adding a login/signup flow, "add social login", gating content by user role, protecting a function or page behind auth, assigning roles at signup, customizing auth emails, or handling OAuth/confirmation/recovery callbacks. Not for locking an entire site to a company/team — that is netlify-access-control.
日本語の概要は準備中です。原文の説明を表示しています。
Use when tasks involve reading, creating, or reviewing PDF files where rendering and layout matter; prefer visual checks by rendering pages (Poppler) and use Python tools such as `reportlab`, `pdfplumber`, and `pypdf` for generation and extraction.
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Serverless form handling on Netlify-hosted sites — detects HTML forms at deploy time, stores submissions, filters spam, and sends notifications. Use when adding a contact form, lead-capture form, file-upload form, or newsletter signup to a Netlify site; wiring AJAX form submission; setting up a custom thank-you page; adding a honeypot or reCAPTCHA to a form; getting forms working in Next.js, Nuxt, SvelteKit, Astro, or Gatsby; reading form submissions via the Netlify API; or debugging missing submissions and forms that silently fail to register.
日本語の概要は準備中です。原文の説明を表示しています。
Create and scaffold plugin directories for Codex with a required `.codex-plugin/plugin.json`, optional plugin folders/files, valid manifest defaults, and personal-marketplace entries by default. Use when Codex needs to create a new personal plugin, add optional plugin structure, generate or update marketplace entries for plugin ordering and availability metadata, or update an existing local plugin during development with the CLI-driven cachebuster and reinstall flow.
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Use when the user asks about finding the best, top, or recommended model for a task, wants to know what AI model to use, or wants to compare models by benchmark scores. Triggers on: "best model for X", "what model should I use for", "top models for [task]", "which model runs on my laptop/machine/device", "recommend a model for", "what LLM should I use for", "compare models for", "what's state of the art for", or any question about choosing an AI model for a specific use case. Always use this skill when the user wants model recommendations or comparisons, even if they don't explicitly mention HuggingFace or benchmarks.
日本語の概要は準備中です。原文の説明を表示しています。
Generate or edit raster images when the task benefits from AI-created bitmap visuals such as photos, illustrations, textures, sprites, mockups, or transparent-background cutouts. Use when the active client should create a new image, transform an existing image, or derive visual variants from references, and route through only the image tool or approved API actually exposed by that host.
日本語の概要は準備中です。原文の説明を表示しています。
Create a SageMaker endpoint (real-time, real-time scale-to-zero, or async) with autoscaling, CloudWatch alarms, and tagging enabled by default. Use this skill whenever about to create a SageMaker endpoint, write deployment code that calls `create_endpoint`, or finalize a deployment after the image URI and IAM role are known. Provides deploy.py for real-time endpoints, deploy_ic.py for real-time endpoints that scale to zero instances via inference components, and deploy_async.py for async endpoints (also scale-to-zero). This is the last step in the SageMaker deployment workflow. Never generate a bare `create_endpoint` call without these defaults — endpoints without autoscaling or alarms are demos, not deployments.
日本語の概要は準備中です。原文の説明を表示しています。
Build and publish a Gradio demo on Hugging Face Spaces for a user-provided LoRA. Use when someone asks to create, generate, ship, or publish a Space, demo, Gradio app, or playground for a LoRA — including LoRAs for Qwen-Image, Qwen-Image-Edit, LTX-Video, Wan, FLUX, SDXL, or other diffusion base models. Also triggers when someone describes a LoRA they trained or hosts on the Hub and wants to share it. Covers picking the right base pipeline and `diffusers` inference recipe, designing a UI tailored to the LoRA's task and inputs (Union/multi-task control, edit, video, image, etc.), respecting model-card recommendations (trigger words, steps, guidance, LoRA scale, example inputs), and shipping to ZeroGPU hardware as a private Space by default.
日本語の概要は準備中です。原文の説明を表示しています。
Use this skill alongside figma-use when the task involves translating an application page, view, or multi-section layout into Figma. Triggers: 'write to Figma', 'create in Figma from code', 'push page to Figma', 'take this app/page and build it in Figma', 'create a screen', 'build a landing page in Figma', 'update the Figma screen to match code', 'convert this modal/dialog/drawer/panel to Figma'. This is the preferred workflow skill whenever the user wants to build or update a full page, modal, dialog, drawer, sidebar, panel, or any composed multi-section view in Figma from code or a description. Discovers design system components, variables, and styles from Code Connect files, existing screens, and library search, then imports them and assembles views incrementally section-by-section using design system tokens instead of hardcoded values.
日本語の概要は準備中です。原文の説明を表示しています。