1,317 件 ・ 関連度順
概要と使いどころ
Deep learning for drug discovery. 60+ models (GCN, GAT, AttentiveFP, MPNN, ChemBERTa, GROVER), 50+ featurizers, MoleculeNet benchmarks, HPO, transfer learning. Unified load-featurize-split-train-evaluate API. For fingerprints use rdkit-cheminformatics; for featurization-only use molfeat.
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Molecular featurization hub (100+ featurizers) for ML. SMILES to fingerprints (ECFP, MACCS, MAP4), descriptors (RDKit 2D, Mordred), pretrained embeddings (ChemBERTa, GIN, Graphormer), pharmacophores. Scikit-learn compatible with parallelization/caching. For QSAR, virtual screening, similarity, and molecular DL.
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Query OpenAlex REST API for 250M+ scholarly works, authors, institutions, journals, concepts. Search by keyword, author, DOI, ORCID, or ID; filter by year, OA, citations, field; retrieve citations, references, author disambiguation. Free, no auth. For PubMed use pubmed-database; preprints use biorxiv-database.
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Query bioRxiv/medRxiv preprints via REST API. Search by DOI, category, or date range; retrieve metadata (title, abstract, authors, category, DOI, version history) and PDFs. No auth. For peer-reviewed biomedical use pubmed-database; broader scholarly search use openalex-database.
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Query InterPro REST API for protein domain architecture, family classification, and member-DB integration. Search entries, retrieve a protein's domains, list family members, get taxonomic distribution, link to PDB. Unifies Pfam, PANTHER, PIRSF, PRINTS, PROSITE, SMART, CDD, NCBIfam. Use uniprot-protein-database for sequences; pdb-database for 3D structures.
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MS spectral matching and metabolite ID with matchms. Import spectra (mzML, MGF, MSP, JSON), filter/normalize peaks, score similarity (cosine, modified cosine, fingerprint), build reproducible pipelines, identify unknowns vs spectral libraries. Use pyopenms for full LC-MS/MS proteomics.
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Guide for choosing and creating scientific visualizations for publications and talks. Covers chart-type selection by data structure, color theory for accessibility/print, figure composition, journal formatting (Nature, Cell, ACS), and common pitfalls. Consult when visualizing data or preparing submission figures.
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Batch-resize or convert a folder of images for web, social media, slides, or ARCH-size print output while preserving originals. Use for image resizing, format presets, or photo batches; not for product-image background removal.
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Provides expert guidance for building GraalVM Native Image executables from Java applications. Use when converting JVM applications to native binaries, optimizing cold start times, reducing memory footprint, configuring native build tools for Maven or Gradle, resolving reflection and resource issues in native builds, or implementing framework-specific native support for Spring Boot, Quarkus, and Micronaut. Triggers include "graalvm native image", "native executable java", "java cold start optimization", "native build tools", "ahead of time compilation java", "reflection config graalvm", "native image build failure".
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Calculate carbon footprint of construction projects. Estimate CO2 emissions from materials, transportation, and construction processes using emission factors databases.
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Fixes broken decks/PDFs exported from Claude's "Design" feature (or similar AI deck generators) — cut-off or clipped text, wrong/substituted fonts, and corrupted .pptx package structure that shows up only once you export to PDF, not while looking at it in the app. Use this skill whenever the user uploads a zip, .pptx, or .pdf exported from Claude Design (or mentions "Design" export, an AI-generated deck, or a generated slide deck/PDF) AND reports it looking broken, wrong, cut off, garbled, or different from the original when opened, printed, or converted to PDF — even if they don't use the word "repair" or name the specific defect. Also trigger for general "my exported PDF/deck is broken, help fix it" requests when the file was clearly produced by an AI design/deck tool rather than hand-authored. Produces both a repaired, still-editable .pptx and a clean PDF, plus a report of exactly what was wrong and what changed.
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Extract key concepts from any content and create spaced-repetition flashcards. Multiple formats: Anki-compatible, printable PDFs, interactive web.
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Scores backlog items with RICE/WSJF/Kano and files GitHub issues for top candidates. Use when triaging a roadmap or prioritizing features for a sprint.
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Use when a skill fails for a missing tool or the environment needs checking. Diagnoses Python, R, Node, Claude Code, Git, Zotero and configured MCP servers and prints a pass/fail table with links to the setup docs. Read-only; installs nothing.
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Use when a medical AI paper should be found and cited by AI search engines and RAG tools. Optimizes the title, abstract, summary box (Key Points, Research in Context), keywords, preprint, GitHub README/CITATION.cff and Hugging Face card, returning a visible pass/fail checklist.
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Guides agents using the datamol Python package for RDKit-first molecular IO, preparation, fingerprints, similarity, structure generation, visualization, and utility workflows.
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Use Chemprop 2.2.3 for molecular property prediction: CLI training, prediction, fingerprints, data validation, Python APIs, reaction/atom-bond tasks, uncertainty, hpopt, and conversion workflows.
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CTF challenge router - fingerprint a challenge (file type / prompt / artifacts) into its category (pwn, rev, crypto, forensics, stego, web, osint, hash) and route to the matching wiki page, tools, and first moves. Wiki-first.
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Autonomous CTF / boot-to-root campaign driver. Runs a box end to end with no operator approvals - the deterministic driver (scripts/campaign.py) owns pass state, generates the killchain board from recon, and prints the exact next action (Skill + tool) every turn. Use when handed a box/IP to own end to end, "run the ctf workflow", "root this box", "foothold to root". Single agent, wiki-first, tool-first. OSINT is OFF unless you invoke with an osint argument. Delegates box recipes to ctf-box.
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Insecure deserialization hunting across Java / .NET / PHP / Python / Ruby / Node. Gadget-chain RCE, OOB-gated blind detection, magic-byte fingerprinting. Wiki-first, FIND schema output.
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Enterprise SSL VPN attack - vendor fingerprinting, CVE matrix (Cisco, Fortinet, Citrix, Palo Alto, Pulse/Ivanti), default credentials, pre-auth exploit commands. Wiki-first, FIND schema output.
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Autonomous pentest campaign driver. Runs a scoped engagement end to end with no operator approvals - the deterministic driver (scripts/campaign.py) owns pass state, generates the killchain board from recon, and prints the exact next action (Skill + tool) every turn. Use when starting or resuming a pentest, "run the pt workflow", "work this CIDR/domain", or when handed a client SoW/scope to reach a stated objective or domain admin. Single agent, refuter-verified, wiki-first, tool-first. Deliverable is a client report.
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Autonomous bug-bounty campaign driver. Runs a full programme end to end with no operator approvals - the deterministic driver (scripts/campaign.py) owns pass state, generates the killchain board from recon, and prints the exact next action (including which Skill and tool to run) every turn. Use when starting or resuming a bug-bounty engagement, "run the bb workflow", "hunt this program", "9-pass campaign", or when handed a *.scope wildcard to test for TIER1 findings. Single agent, refuter-verified, wiki-first, tool-first.
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Report this session's output tokens and CO₂ by running the repo's committed EcoLogits port, plus the modelled CO₂/$ saved vs a no-Honey baseline — always labelled with the bench stamp it came from. Use when asked how much Honey saved, the session's carbon/token footprint, or to expand the 🍯 statusline badge into a full breakdown.
日本語の概要は準備中です。原文の説明を表示しています。