「owl」の検索結果

Deep learning for single-cell analysis using scvi-tools. This skill should be used when users need (1) data integration and batch correction with scVI/scANVI, (2) ATAC-seq analysis with PeakVI, (3) CITE-seq multi-modal analysis with totalVI, (4) multiome RNA+ATAC analysis with MultiVI, (5) spatial transcriptomics deconvolution with DestVI, (6) label transfer and reference mapping with scANVI/scArches, (7) RNA velocity with veloVI, or (8) any deep learning-based single-cell method. Triggers include mentions of scVI, scANVI, totalVI, PeakVI, MultiVI, DestVI, veloVI, sysVI, scArches, variational autoencoder, VAE, batch correction, data integration, multi-modal, CITE-seq, multiome, reference mapping, latent space.

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Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant calling, gene expression, differential expression, GEO reanalysis, GSE/GSM/SRR accessions, or samplesheet creation.

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Convert laboratory instrument output files (PDF, CSV, Excel, TXT) to Allotrope Simple Model (ASM) JSON format or flattened 2D CSV. Use this skill when scientists need to standardize instrument data for LIMS systems, data lakes, or downstream analysis. Supports auto-detection of instrument types. Outputs include full ASM JSON, flattened CSV for easy import, and exportable Python code for data engineers. Common triggers include converting instrument files, standardizing lab data, preparing data for upload to LIMS/ELN systems, or generating parser code for production pipelines.

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QA an analysis before sharing -- methodology, accuracy, and bias checks. Use when reviewing an analysis before a stakeholder presentation, spot-checking calculations and aggregation logic, verifying a SQL query's results look right, or assessing whether conclusions are actually supported by the data.

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Build an interactive HTML dashboard with charts, filters, and tables. Use when creating an executive overview with KPI cards, turning query results into a shareable self-contained report, building a team monitoring snapshot, or needing multiple charts with filters in one browser-openable file.

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Review code changes for security, performance, and correctness. Trigger with a PR URL or diff, "review this before I merge", "is this code safe?", or when checking a change for N+1 queries, injection risks, missing edge cases, or error handling gaps.

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Save an insight, decision, or learning to agentmemory's long-term storage with searchable concept tags. Use when the user says "remember this", "save this", "note that", "don't forget", or wants to preserve knowledge for future sessions.

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Index a local file or directory into context-mode's persistent FTS5 knowledge base so future ctx_search calls can retrieve focused snippets without rereading raw files. Trigger: /context-mode:ctx-index

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Purge the context-mode knowledge base. Permanently deletes all indexed content and resets session stats. This is destructive and cannot be undone. Trigger: /context-mode:ctx-purge

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Show how much context window context-mode saved this session. Displays token consumption, context savings ratio, and per-tool breakdown. Read-only — shows stats only, no reset capability. To wipe the knowledge base entirely, use ctx_purge instead. Trigger: /context-mode:ctx-stats

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Search context-mode's persistent FTS5 knowledge base for previously indexed local project content, documentation, or session memory. Trigger: /context-mode:ctx-search

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Smoke test the Agent Builder feature branch end-to-end against a hermetic project scaffolded by the skill (linked to the current worktree). Covers workspace reconciliation, stored agents/skills CRUD, ownership, visibility, stars, registry/library Copy flow, picker allowlists, model policy, RBAC role gating, role impersonation UI, builder defaults, infrastructure diagnostics, channels, and Studio + Agent Builder UI. Trigger when validating the agent-builder feature branch, PRs that touch packages/server, packages/playground, packages/playground-ui agent-builder routes, or builder EE code paths.

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Analyze indexed codebases via graph database (neug) and vector index (zvec). Covers call graphs, dependencies, dead code, hotspots, module coupling, architecture reports, semantic search, impact analysis, bug root cause from GitHub issues, class diagrams (UML), and PR review (risk scoring, conflict detection, auto-merge candidates, labeling). Also covers creating, inspecting, and repairing a CodeScope index. Use for: code structure, who calls what, why something changed, similar functions, module boundaries, bug tracing, class relationships, PR risk/conflicts, or any question benefiting from a code knowledge graph. Applies when a `.codegraph` index exists in the workspace, or when the user wants to create one.

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Explicitly save important knowledge to auto-memory with timestamp and context. Use when a discovery is too important to rely on auto-capture.

日本語の概要は準備中です。原文の説明を表示しています。

Board meeting preparation for the adversarial scenario, not the friendly one. Forces numbers-cold mastery, anticipates hard questions, builds a narrative that acknowledges weakness without losing the room. Use when preparing for a board meeting, an investor update, fundraising presentation, or any high-stakes adversarial review where every number must live in your head not just on a slide.

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Use when running, diagnosing, or designing internal business operations — process documentation, vendor SLAs, capacity planning, internal comms, SOP/runbook authoring, procurement spend. Triggers on "BizOps review", "where's the bottleneck", "vendor health", "internal SOP", "all-hands deck", "spend categorization", "capacity for Q3", "process mapping". Forks context to route to one of six BizOps sub-skills (process-mapper, vendor-management, capacity-planner, internal-comms, knowledge-ops, procurement-optimizer) and returns a digest. Distinct from business-growth (external sales motion) and c-level-advisor (strategic, not operational).

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Use when the user asks to deeply read a book, article, PDF, or document set; extract claims and evidence; build a knowledge map; or learn through Feynman explanation and recall. Covers quick, deep, map, Feynman, and whole-book reading modes.

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Use when the user asks how to build with OpenAI products or APIs, asks about Codex itself or choosing Codex surfaces, needs up-to-date official documentation with citations, help choosing the latest model for a use case, or model upgrade and prompt-upgrade guidance; use OpenAI docs MCP tools for non-Codex docs questions, use the Codex manual helper first for broad Codex self-knowledge, and restrict fallback browsing to official OpenAI domains.

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Capture conversations and decisions into structured Notion pages; use when turning chats/notes into wiki entries, how-tos, decisions, or FAQs with proper linking.

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Guide for creating effective skills. This skill should be used when users want to create a new skill (or update an existing skill) that extends Codex's capabilities with specialized knowledge, workflows, or tool integrations.

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Knowledge comic creator supporting multiple art styles and tones. Creates original educational comics with detailed panel layouts and batch-capable image generation. Use when user asks to create "知识漫画", "教育漫画", "biography comic", "tutorial comic", or "Logicomix-style comic".

日本語の概要は準備中です。原文の説明を表示しています。

Author the architecture blueprint before code is written. Validates decisions against the pinned engine, flags knowledge gaps.

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Sweep configured feedback sources (Slack, GitHub Issues; email experimental) for new items: acknowledge at source, analyze recordings, verify fixes merged to main, and emit an `lfg`-ready plan. First run sets up sources; supports mode:non-interactive for scheduled runs.

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Use when building, editing, validating, testing, or debugging an n8n workflow through the n8n-mcp MCP server — designing a flow, configuring a node, writing an expression or Code node, wiring credentials, or fixing one that misbehaves. The entry-point skill for the n8n-mcp-skills pack: it routes you to the right specialist skill, gives working knowledge of every n8n-mcp tool from turn one, and states the rules that keep workflows from breaking in production. Always consult it first on any n8n, workflow, node, or automation task — even a quick one-off, and even when the user names no skill — because n8n's surface drifts between versions and the specialist skills prevent silent failures.

日本語の概要は準備中です。原文の説明を表示しています。