「compare」の検索結果

Visualises RNA-modification data with transcript-feature metagene plots (Guitar GuitarPlot; MetaPlotR; deepTools computeMatrix scale-regions), peak-centred heatmaps (ComplexHeatmap; deepTools plotHeatmap), IP-vs-input paired browser tracks (log2 IP/input bigWig via deepTools bamCompare; pyGenomeTracks; Gviz; IGV/UCSC track hubs), DRACH sequence-logo plots (ggseqlogo; MEME), feature-distribution stacked bars, and volcano/MA plots for differential modification. Establishes stop-codon enrichment in the metagene plot as the biological QC anchor for any MeRIP dataset (Dominissini 2012; Meyer 2012). Use when producing the canonical metagene plot with stop-codon enrichment as a QC anchor, building paired IP/input genome-browser tracks at single-locus resolution, plotting peak-centred heatmaps clustered by condition, summarising peak distribution across transcript features, generating DRACH motif logos as sanity checks, rendering volcano plots of differential m6A, or reproducing the stop-codon enrichment plot.

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Performs alchemical free-energy calculations including relative binding free energy (RBFE / FEP+) and absolute binding free energy (ABFE) via OpenFE, FEP+, GROMACS, AMBER pmemd, and OpenMM with explicit lambda scheduling, soft-core potentials, MBAR/BAR analysis, cycle-closure validation, and protocol-appropriate enhanced sampling. Compares ML alternatives (Boltz-2 affinity, DeepDock). Use when ranking analogs by binding affinity beyond docking accuracy, performing prospective lead optimization, or validating SAR predictions.

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Quantifies CRISPR editing outcomes with CRISPResso2 (Clement 2019 Nat Biotechnol) across Cas9-nuclease (indels, HDR), CBE and ABE base editors (target conversion + bystander), and prime editor (pegRNA-templated) modes. Covers single-amplicon (CRISPResso), multi-sample batch (CRISPRessoBatch), pooled-amplicon (CRISPRessoPooled), WGS off-target (CRISPRessoWGS), and sample-comparison (CRISPRessoCompare) workflows; quantification-window math that controls what is called edited; substitution-vs-indel diagnostic to distinguish BE from Cas9 contamination; MMEJ deletion pattern interpretation; allele-frequency tables; and failure modes from amplicon misalignment or contamination. Use when quantifying editing from amplicon sequencing, choosing CRISPResso mode by design, distinguishing intended edits from bystanders and indel byproducts, debugging low-alignment runs, or generating publication-grade editing reports.

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Recommends initiating intravenous bisphosphonate or denosumab for adults with hypercalcemia of malignancy compared with no treatment. Use when a clinician asks about first‑line pharmacologic therapy for HCM or when deciding to start antiresorptive agents.

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Diff a live page's accessibility violations against a baseline — by default compares uncommitted changes (stash-based), or pass --branch [<name>] to diff against a branch. Reports only new violations introduced, violations fixed, and pre-existing count. Use `scan` for a full audit with no diffing.

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This skill should be used when the user asks to "implement LLM-as-judge", "compare model outputs", "create evaluation rubrics", "mitigate evaluation bias", or mentions direct scoring, pairwise comparison, position bias, evaluation pipelines, or automated quality assessment.

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Use for tradeoff analysis, or when the user must pick between concrete options: "A or B?", "which library should we use?", "build vs buy", "compare these approaches". Scores options on weighted criteria, tests sensitivity and reversibility. Skip for open ideation or single-option reviews.

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Generate multiple radically different interface designs for a module using parallel sub-agents. Use when user wants to design an API, explore interface options, compare module shapes, or mentions "design it twice".

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Throwaway HTML mockups: 2-3 design variants to compare.

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Turn briefs, mockups, and product context into Stitch UI screens, design systems, variants, prototypes, Tailwind-friendly HTML, and screenshots. Use when the user wants to explore a screen, edit an existing Stitch project, compare visual directions, build a multi-screen prototype, or save local design/code-export artifacts from natural-language input.

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Investigate two separate areas of the codebase simultaneously and combine findings into a comparison report. Use when you need research on two independent topics at once, want to compare two subsystems, or need to understand how two components relate to each other.

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Audit one or all supported agent harnesses (claude, codex, opencode, pi, omp, antigravity, cursor, grok) for config efficiency, hook overhead, permission friction, plugin and MCP cost, skill metadata portability, dead config, and measured session friction. Use when invoked as `$optimize-harness [harness ...] [focus]`, or when the user asks to optimize or compare agent harness configuration.

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Explore open-source GitHub repository source trees via web browsing to analyze and compare feature implementations at the code level. Supports two modes: cross-project comparison and single-project deep dive. Use when evaluating how OSS projects implement a specific feature, choosing architecture patterns, or benchmarking implementation strategies.

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Research and compare how competing products implement a similar feature at the UX and interaction level. Provides structured comparison tables and strategic differentiation recommendations.

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Use when comparing this package to a peer / competitor — ours-vs-theirs verdict table, axis selection, adoption queue. Triggers on 'how do we compare to X', 'should we adopt their pattern'.

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Harness-first workflow for evaluating and improving terminal UIs through real interaction. Use this whenever the user wants to review a TUI experience, compare before/after behavior, identify UX friction, validate navigation or filtering flows, inspect visual stability, or turn observed interaction problems into concrete follow-up tests and improvement recommendations. Prefer this skill any time a TUI should be exercised through a reproducible PTY/session harness instead of only reading code.

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Visualize métricas de treinamento, depure modelos com histogramas, compare experimentos, visualize grafos de modelos e perfil de desempenho com TensorBoard - kit de visualização de ML do Google

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[Architecture] Use when you need to research, analyze, and compare tech stack options as a solution architect.

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[Git] Use when the user asks to compare branches, analyze git diffs, review changes between branches, update specifications based on code changes, or analyze what changed.

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Compares a group of companies by products, positioning, market focus, and differentiators. Use when the user provides several company records and wants a structured competitive comparison.

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Conduct comprehensive AI-powered research with citations via the Tavily CLI. Use this skill when the user wants deep research, a detailed report, a comparison, market analysis, literature review, or says "research", "investigate", "analyze in depth", "compare X vs Y", "what does the market look like for", or needs multi-source synthesis with explicit citations. Returns a structured report grounded in web sources. Takes 30-120 seconds. For quick fact-finding, use tavily-search instead.

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Compare model candidates using weighted metrics and deterministic ranking outputs. Use for benchmark leaderboards and model promotion decisions.

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Pull the latest GEO-SEO skill updates from the upstream repository. Compares installed files against the latest release, shows what changed, and updates all skills, agents, scripts, and schema templates in place.

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Validate Commodore MPS-801 serial dot matrix printer behavior in EMULATORS, including SerialPrinterMPS801 classes and their MatrixPrinterEmulation and SerialPrinterPeripheralSimulation hierarchy, IEC/KERNAL-trap printer routing, device numbers, secondary addresses, PETSCII/character sets, 6x7 glyphs, double width, graphics mode, reverse field, tab and dot positioning, line/page geometry, PostScript output, and fidelity boundaries. Use when Codex reviews or edits COMMODORE MPS801 printer code, generated printer output, PostScript printer templates, C64/VIC-20/C264 serial-printer behavior, or compares implementation against .codex/docs/MPS801.pdf and historical MPS-801 sources.

日本語の概要は準備中です。原文の説明を表示しています。