Controls error rates across thousands of simultaneous tests in genomics discovery using false-discovery-rate methods (Benjamini-Hochberg 1995; Benjamini-Yekutieli 2001 for arbitrary dependence; Storey q-value with pi0 estimation; local FDR; independent filtering Bourgon 2010; covariate-weighted FDR via IHW Ignatiadis 2016), plus family-wise error control (Bonferroni, Holm) and the GWAS genome-wide threshold. Covers the FDR-versus-FWER choice as the discovery-versus-confirmatory distinction, the dependence assumptions behind BH (PRDS) versus BY, pi0 estimation, the independent-filtering and false-coverage-rate traps, and reproducibility ranking via IDR (Li 2011). Use when correcting p-values from genome-wide tests, choosing between BH/BY/q-value/Bonferroni, setting an FDR threshold, applying IHW or independent filtering, or interpreting q-values. For confirmatory trials with few pre-specified endpoints (closed testing, graphical/gatekeeping), see clinical-biostatistics/multiplicity-graphical.
日本語の概要は準備中です。原文の説明を表示しています。
huang-sh/DeepScience☆ 42026年7月15日 更新
Meta-analysis / evidence synthesis — pool effect sizes across studies (odds ratios, risk ratios, hazard ratios, mean differences, correlations, GWAS betas) with fixed- or random-effects models, quantify heterogeneity (Q, I², τ²), and build a forest plot. Use when you have results from MULTIPLE studies and need a single pooled estimate, or to synthesize evidence from a systematic review / multiple GWAS / replicated experiments. Handles the error-prone effect-size + standard-error preparation (converting OR/HR/CI, two-group means±SD, proportions, and correlations into the (effect, SE) the pooling step needs).
日本語の概要は準備中です。原文の説明を表示しています。
huang-sh/DeepScience☆ 42026年7月15日 更新
Nonlinear curve fitting for physics data with proper error propagation, chi-squared analysis, residual diagnostics, confidence intervals, and model comparison (AIC/BIC). Use for any parameter extraction from experimental or simulation data.
日本語の概要は準備中です。原文の説明を表示しています。
huang-sh/DeepScience☆ 42026年7月15日 更新
End-to-end 16S/ITS amplicon workflow from demultiplexed FASTQ to a consensus differential-abundance result, orchestrating cutadapt primer removal, per-run DADA2 ASV inference (learnErrors/mergeSequenceTables/removeBimeraDenovo), region-matched taxonomy assignment, a SEPP/Greengenes2 tree, alpha/beta diversity at a declared sampling depth (phyloseq/vegan, adonis2 paired with betadisper), compositional DA as a consensus of >=2 tools (ALDEx2/ANCOM-BC2) on unrarefied counts, and optional PICRUSt2 functional prediction gated on NSTI. Covers the stage-ordering decisions (primers before truncation, per-run error model, rarefy for diversity not DA, predicted potential not activity) and defers each per-step choice to the six microbiome skills. Use when staging an amplicon study end to end or chaining ASV inference, taxonomy, diversity, and differential abundance. For shotgun reads see workflows/metagenomics-pipeline.
日本語の概要は準備中です。原文の説明を表示しています。
huang-sh/DeepScience☆ 42026年7月15日 更新
Stellar smart contract development (Rust, soroban-sdk). Entry point with project setup, contract anatomy, and build/deploy workflow, routing to three companion files in this directory — development.md (storage/TTL, authorization, cross-contract calls, tokens, events, errors, upgrades, fees, troubleshooting), testing.md (unit, fuzz, property, fork, mutation, integration), and security.md (vulnerability classes, checklists, tooling, audits). Use when writing, testing, reviewing, securing, debugging, or shipping Stellar smart contracts, including anything the user calls "Soroban" — Soroban contracts, soroban-sdk, Soroban auth/storage/TTL errors, SEP-41 tokens, or SAC integration from contract code.
日本語の概要は準備中です。原文の説明を表示しています。
stellar-zk/stellar-zk☆ 42026年10月15日 更新
Rust 言語リファレンス。 別名: rustlang, rs (拡張子)、Rust-lang。 TRPL (The Rust Programming Language)、Rust by Example、Reference、 Cargo Book、rustc Book、rustdoc Book、Rustonomicon (Unsafe Rust)、 Edition Guide、Standard Library、Error Index。 所有権、ライフタイム、トレイト、async / await、エラーハンドリング、マクロ。
Fandhe-AI/agent-reference-skills☆ 42026年10月18日 更新
React Router v8 (RR8、旧 Remix) の Framework / Data / Declarative Mode リファレンス。 loader, action, middleware, routes.ts, shouldRevalidate、createBrowserRouter, RouterProvider, BrowserRouter、 hooks (useLoaderData, useActionData, useFetcher, useNavigate, useNavigation, useParams, useSearchParams)、 Form, Link, NavLink, Outlet, Route, Routes, Await、SSR / SPA / Static / RSC、ErrorBoundary, redirect, defer (v7 で削除), session, matchPath, matchRoutes, type-safe routing。 TanStack Router (@tanstack/react-router) とは別ライブラリ。
Fandhe-AI/agent-reference-skills☆ 42026年10月18日 更新
OpenAI API (developers.openai.com) の Responses API リファレンス。 text generation, embeddings, gpt-6-astra / gpt-6.1-sol / gpt-6-luna, structured outputs, streaming, function calling, programmatic / async tool calling, conversation state, prompt caching, prompt cache diagnostics, reasoning (configuration_update), background mode, compaction, multi-agent, WebSocket mode (mid-turn steering, stream_id), webhooks, error codes, rate limits, Realtime server controls, 公式 SDK (Python / JS / .NET / Java / Go / Ruby), openai CLI, Chat Completions / Assistants 移行, deprecations。
Fandhe-AI/agent-reference-skills☆ 42026年10月18日 更新
Stripe 決済プラットフォームリファレンス (API 2026-09-30.endive)。 PaymentIntents, Checkout, Payment Links, Elements, Link, Managed Payments, Subscriptions, Invoices, Connect (Accounts v2), Radar, Terminal, Tax, Issuing, Treasury, Capital, Financial Connections, Climate, Revenue Recognition, Crypto Onramp, stablecoin, Identity, Webhooks, Stripe CLI, idempotency, API versioning, pagination, error handling。
Fandhe-AI/agent-reference-skills☆ 42026年10月18日 更新
OpenAI API (developers.openai.com) の運用・管理リファレンス。 Administration API, admin API keys, RBAC, roles, groups, invites, projects, spend limits, audit logs, usage / costs API, Terraform provider (openai/openai), workload identity federation (WIF, OIDC / SPIFFE / X.509 / Idira), moderation API, misalignment monitoring, safety alerts / cases, safety best practices, under-18 guidance, ZDR Private Safety Processing (PSP), production best practices, deployment checklist, cost / latency optimization, fast / ultrafast mode, Realtime API costs。 rate limits・error handling・prompt caching・webhooks は openai-api-core、Codex WIF・管理は openai-codex。
Fandhe-AI/agent-reference-skills☆ 42026年10月18日 更新
Pino (高速 JSON 構造化ロガー for Node.js、Fastify 標準ロガー) リファレンス。 logger, child logger, log levels (info / warn / error / debug / trace)、transport、 pretty print (pino-pretty)、redaction (機密情報マスキング)、serializers、 async / sync logging、ファイル出力、structured logging。
Fandhe-AI/agent-reference-skills☆ 42026年10月18日 更新
Claude API (platform.claude.com) の Messages API リファレンス。 streaming (SSE), thinking (adaptive) / preserved thinking / effort, prompt caching, context editing, compaction (on-demand / threshold), structured outputs, Message Batches, token counting, vision / PDF, Files API, citations, embeddings (Voyage AI), errors, rate limits, beta headers, Bedrock / Vertex AI / Foundry 経由アクセス。
Fandhe-AI/agent-reference-skills☆ 42026年10月18日 更新
有馬記念分析システムのアーキテクチャ/レイヤー境界レビュー。docs/ARCHITECTURE.md のレイヤー構成(commands / domain / repositories / models / features / constants / database / utils / types)に対し、レイヤーディレクトリの意味と配置、参照系(queries)と更新系(aggregates)の分離、DB 接続の注入可能性とテスト容易性、リッチドメインモデルの維持(commands 肥大・ドメイン貧血症)、重み・閾値の constants 単一定義、ファイル配置と命名語彙の一致、不要な抽象化、種別分岐のポリモーフィズム化、生成引数の凝集(5個以上は分割シグナル)を検証。純粋性・依存方向の逆流・DB 接続の生成箇所は lint が error で担保するため扱わない。Use when user says 'アーキテクチャレビュー', 'レイヤー境界チェック', 'review architecture', or '依存方向の確認'.
sogengineer/arima-analy☆ 42026年9月21日 更新
Controls error rates across thousands of simultaneous tests in genomics discovery using false-discovery-rate methods (Benjamini-Hochberg 1995; Benjamini-Yekutieli 2001 for arbitrary dependence; Storey q-value with pi0 estimation; local FDR; independent filtering Bourgon 2010; covariate-weighted FDR via IHW Ignatiadis 2016), plus family-wise error control (Bonferroni, Holm) and the GWAS genome-wide threshold. Covers the FDR-versus-FWER choice as the discovery-versus-confirmatory distinction, the dependence assumptions behind BH (PRDS) versus BY, pi0 estimation, the independent-filtering and false-coverage-rate traps, and reproducibility ranking via IDR (Li 2011). Use when correcting p-values from genome-wide tests, choosing between BH/BY/q-value/Bonferroni, setting an FDR threshold, applying IHW or independent filtering, or interpreting q-values. For confirmatory trials with few pre-specified endpoints (closed testing, graphical/gatekeeping), see clinical-biostatistics/multiplicity-graphical.
日本語の概要は準備中です。原文の説明を表示しています。
peacezha/TRACE☆ 32026年10月18日 更新
Model gene-family birth-death dynamics across a species tree using CAFE5 (Mendes et al 2020 Bioinformatics 36:5516 gamma-distributed rate categories), CAFE5-error (annotation-error-aware), Count (Csurös 2010 ancestral state reconstruction), BadiRate (Librado 2012 likelihood + parsimony), DupliPHY-Family, and ALE/AleRax (for per-family DTL; see [[gene-tree-species-tree-reconciliation]]). Test lineage-specific gene-family expansions and contractions, distinguish biological dynamics from annotation artifacts, account for assembly fragmentation, identify functional enrichment in expanded / contracted families. Use when correlating gene-family changes with phenotype evolution, ranking lineages by adaptive gene-family-rate shifts, post-WGD dosage-balance analysis, or building Birth-death models from OrthoFinder presence/absence matrices.
日本語の概要は準備中です。原文の説明を表示しています。
peacezha/TRACE☆ 32026年10月18日 更新
Use when implementing error handling, exception mappers, or error response formatting. Enforces RFC 9457 (Problem Details for HTTP APIs) using Spring's built-in ProblemDetail.
日本語の概要は準備中です。原文の説明を表示しています。
lgzarturo/springboot-course☆ 32026年10月17日 更新
Debug Spring Boot issues systematically. Use when encountering bean errors like NoSuchBeanDefinitionException, circular dependency issues, application startup failures, JPA/Hibernate problems including LazyInitializationException and N+1 queries, security misconfigurations causing 403 Forbidden errors, property binding failures, CSRF token issues, or any Spring Boot application requiring diagnosis with Actuator endpoints and JVM debugging.
日本語の概要は準備中です。原文の説明を表示しています。
lgzarturo/springboot-course☆ 32026年10月17日 更新
Improve interface resilience through better error handling, i18n support, text overflow handling, and edge case management. Makes interfaces robust and production-ready. Use when the user asks to harden, make production-ready, handle edge cases, add error states, or fix overflow and i18n issues.
日本語の概要は準備中です。原文の説明を表示しています。
waynesutton/finder9☆ 32026年5月24日 更新
Improve unclear UX copy, error messages, microcopy, labels, and instructions to make interfaces easier to understand. Use when the user mentions confusing text, unclear labels, bad error messages, hard-to-follow instructions, or wanting better UX writing.
日本語の概要は準備中です。原文の説明を表示しています。
waynesutton/finder9☆ 32026年5月24日 更新
Use when the user is debugging a bug, tracing an error, or asking why something fails. Examples: "Why is X failing?", "Where does this error come from?", "Trace this bug"
日本語の概要は準備中です。原文の説明を表示しています。
ibragimov-oasis/vibe-coder☆ 32026年6月24日 更新
Improve interface resilience through better error handling, i18n support, text overflow handling, and edge case management, making interfaces robust and production-ready. Use when the user asks to harden, make production-ready, handle edge cases, add error states, or fix overflow and i18n issues.
日本語の概要は準備中です。原文の説明を表示しています。
aladicf/better-react-web-ui☆ 32026年9月8日 更新
Improve UX writing, marketing copy, labels, microcopy, instructions, and error messages so interfaces and product messaging are easier to understand and act on. Use when the user mentions confusing copy, unclear labels, bad error text, weak CTAs, hard-to-follow instructions, or wanting better UX writing.
日本語の概要は準備中です。原文の説明を表示しています。
aladicf/better-react-web-ui☆ 32026年9月8日 更新
Write type-safe TypeScript code with strict mode enabled, comprehensive type definitions, proper error handling, and elimination of any types. Use when enabling TypeScript strict mode, adding types to existing JavaScript, fixing type errors, creating type definitions, using utility types, implementing type guards, avoiding any types, creating generic types, or ensuring complete type safety across the codebase.
日本語の概要は準備中です。原文の説明を表示しています。
Fabric-Pro/fabric-oss☆ 32026年10月16日 更新
Trace bugs backward through call stacks and execution flows to identify the original source of errors, invalid data, or incorrect behavior. Use when debugging complex issues, tracing error origins, investigating data corruption, following execution paths, identifying where invalid data enters the system, or finding root causes of cascading failures.
日本語の概要は準備中です。原文の説明を表示しています。
Fabric-Pro/fabric-oss☆ 32026年10月16日 更新