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概要と使いどころ
Volcano plots represent a useful way to visualise the results of differential expression analyses. Here, we present a highly-configurable function that produces publication-ready volcano plots. EnhancedVolcano will attempt to fit as many po
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Connect new gene expression profile with the relevant information from the existing databases, such as previous publications, MeSH terms, and gene sets.
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Provides utilities for identifying drug-target interactions for sets of small molecule or gene/protein identifiers. The required drug-target interaction information is obained from a local SQLite instance of the ChEMBL database. ChEMBL has been chosen for this purpose, because it provides one of the most comprehensive and best annotatated knowledge resources for drug-target information available in the public domain.
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In recent years a wealth of biological data has become available in public data repositories. Easy access to these valuable data resources and firm integration with data analysis is needed for comprehensive bioinformatics data analysis. bio
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cogeqc aims to facilitate systematic quality checks on standard comparative genomics analyses to help researchers detect issues and select the most suitable parameters for each data set. cogeqc can be used to asses: i. genome assembly and annotation quality with BUSCOs and comparisons of statistics with publicly available genomes on the NCBI; ii. orthogroup inference using a protein domain-based approach and; iii. synteny detection using synteny network properties. There are also data visualizat
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This package provides a client for the Bioconductor ExperimentHub web resource. ExperimentHub provides a central location where curated data from experiments, publications or training courses can be accessed. Each resource has associated me
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Build a SOUL from an X handle - read a wide sample of a public X account, then draft SOUL.md (identity, worldview, opinions), STYLE.md (voice), and examples so every skill speaks in that voice.
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Submit a deployed Uniswap v4 hook to the public univ4-hooks registry - format the listing, open a PR (issue fallback) so it lists on the hook marketplace.
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Write a publication-ready article in one of three angles - a trending long-form piece, a watched-repo thesis, or a project-through-a-lens essay. Optional Replicate hero image with --visual.
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Update developer-facing documentation to reflect code changes on the current branch. Runs as an inline skill inside backend-agent and frontend-agent (step 2.5 of the internal sequence) after implementation and before DOD. Receives the explicit list of changed files from the implementation agent. No-op if no public API changes occurred.
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Programmatic inbox management for Smartlead. Enable/disable warmup with correct ramp settings, set signatures in bulk, tag inboxes (active vs insurance), and pull inbox health dashboards. Use after creating a new batch of inboxes via /zapmail-domain-setup-public, or when managing an existing Smartlead account at scale. Triggers on "turn on warmup", "set signatures", "tag inboxes", "inbox health", "set up new inboxes".
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Upload a CSV of leads + a variants YAML (produced by /campaign-copywriting) to Smartlead as a DRAFT campaign. Handles tag-scoped inbox selection, A/B/C variant assembly, custom field mapping, schedule config, and batch lead upload. ALWAYS creates in DRAFT — you review in Smartlead UI and hit Start manually. Use after /campaign-copywriting, just before the campaign goes live.
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Compare reply rates, bounce rates, and positive reply rates broken down by inbox type (SMTP / Gmail / Outlook) for a Smartlead account. Use when you want to know "which inbox type delivers best" or when debugging unexplained deliverability differences across a mixed fleet. Operates via Smartlead API only (no database required).
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Autonomous cold email campaign launcher. Takes one target company domain, scrapes their website, generates an ICP with Claude, pulls matching leads via Prospeo, enriches emails + company descriptions, personalizes each lead with parallel Claude Code Task sub-agents (A/B/C variants), and uploads as a live Smartlead campaign. Uses local JSON files for state (no database required). Use for automated daily campaign launches after you have an initial `client-profile.yaml` from /icp-onboarding. Triggers on "auto-research", "launch an automated campaign", "daily campaign", "run the research loop".
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Evidence-first development — surround the implementation with an executable spec and a gauntlet of constraints (tests, types, coverage, mutation) so line-by-line review becomes optional. Use when the user explicitly asks for high-assurance or evidence-first work ("reliable", "TDD", "prove it works", "I won't read the code"), or when the change touches high-stakes domains (money, auth, data loss, concurrency, public API). For routine changes where the user just wants normal tests, write good tests directly instead of invoking this loop.
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Search Bilt Rewards travel portal for cash and Bilt Points pricing on hotels and flights. Public REST API, no auth required. Includes Home Away From Home (HaFH) properties with $300+ benefits.
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Cents-per-point (cpp) valuations across major loyalty programs from four publications. Floor/ceiling rules for deciding if a redemption is good or exceptional.
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Generate high-potential viral title candidates for content across WeChat public account articles, X/Twitter posts, YouTube videos, Bilibili videos, and similar content platforms. Use when the user needs headline/title ideation, batch title generation, platform-specific title adaptation, title-library reuse, title selection, title scoring, or a reusable title workflow based on universal formulas plus separated platform methods such as 公众号, X, YouTube, and B站.
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Find WeChat public-account articles that break out above the account's average reads for account-growth topic selection. Use when the user asks to discover 公众号爆款, 微信低粉爆款, 平均阅读爆款, 起号选题, category-based WeChat hot articles, or article references filtered by month_read_avg rather than unstable follower_count.
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Search an index of public repositories, GitHub issues, merged pull requests, repository READMEs, and curated documentation sites. Use when a programming question needs external documentation or upstream evidence.
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Daily cross-platform rankings of AI agent skills (skills.sh, ClawHub, Tencent SkillHub, GitHub, X/HN/Bluesky). Use when the user asks which agent skill to install, what is trending, whether a skill is popular or trusted, or wants to compare skills. Read-only public CSV data; it recommends and links, it does not install anything.
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Run nf-core bioinformatics pipelines (rnaseq, sarek, atacseq) on sequencing data. Use when analyzing RNA-seq, WGS/WES, or ATAC-seq data—either local FASTQs or public datasets from GEO/SRA. Triggers on nf-core, Nextflow, FASTQ analysis, variant calling, gene expression, differential expression, GEO reanalysis, GSE/GSM/SRR accessions, or samplesheet creation.
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Runs once by hand on the first day and once a month after that. On the first run it researches the business from its own public surfaces before asking anything, reads the account structure once, writes the plan folder, seeds the board, creates the creative doctrine, builds the dashboard, and registers the recurring jobs. It asks about exactly two things, the monthly ceiling and the daily cap, because those are the two numbers that decide how much money can leave. On every monthly run it re reads the evidence, corrects what the ledgers prove wrong, and reconciles drift.
日本語の概要は準備中です。原文の説明を表示しています。
Runs once by hand on the first day and once a month after that. On the first run it researches the business from its own public surfaces before asking anything, writes the strategy folder, seeds the launch board, builds the tailored command center, reconciles the schedule table, and registers the recurring jobs. On every monthly run it re-reads the evidence the kit produced, applies what changed, reconciles drift, and rebuilds. It holds every outbound action unless you released the channel, and it never enters a credential.
日本語の概要は準備中です。原文の説明を表示しています。