「structure」の検索結果

Estimates time-scaled phylogenies, molecular-clock rates, effective reproduction number R_e, and population dynamics from dated pathogen genomes using TreeTime (maximum-likelihood) and BEAST2 (Bayesian; strict/relaxed clocks; coalescent, Bayesian-Skyline, Skygrid, Birth-Death-Skyline, and sampled-ancestor priors; structured coalescent via MASCOT). Covers root-to-tip clock QC via TempEst, date-randomisation tests, recombination masking via Gubbins/ClonalFrameML before clock inference for recombining bacteria, BDSKY origin-vs-rootHeight pitfalls, sampling-bias correction, multi-chain convergence diagnostics, and reconciling phylodynamic R_e with case-based R_t. Use when dating outbreak origins, estimating substitution rates, inferring R_e through time, building time-calibrated Nextstrain Augur trees, choosing between strict and relaxed clocks, fitting Birth-Death-Skyline models, diagnosing temporal-signal failure, running MASCOT for structured-population analyses, or using UShER for pandemic-scale placement.

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Access AlphaFold's 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.

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Analyze a single FASTA file (nucleotide or protein), compute sequence-level metrics (GC, ORFs, MW, pI, GRAVY, secondary-structure fractions) with Biopython, and write a Markdown report plus structured JSON for downstream chaining.

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Performs a structured pre‑prescription evaluation of mental/psychological status, prior diabetes self‑care adherence, willingness/interest in CSII, and availability for follow‑up visits. Triggers include: 'Evaluating pump candidacy', 'Pre‑pump checklist: psych, adherence, motivation, follow-up'.

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Plan and implement infrastructure, CI/CD, container, deployment, observability, and operational configuration changes with least privilege, staged validation, and rollback awareness. Use for pipelines, infrastructure as code, Kubernetes, containers, release automation, monitoring, and production-readiness work; do not use to perform destructive production actions without explicit authorization.

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Review application and infrastructure changes for exploitable security risks by tracing assets, trust boundaries, attacker-controlled input, authorization, sensitive data, and dangerous sinks. Use for security reviews, threat-focused PR reviews, authentication or authorization changes, input handling, secrets, dependencies, and infrastructure permissions; do not use to exploit live systems or modify code unless separately requested.

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Expert-level computational biology covering molecular dynamics simulation, protein structure prediction, systems biology, network analysis, and machine learning in biology.

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Expert-level geophysics covering seismic methods, gravity and magnetics, electromagnetic methods, heat flow, Earth structure, and exploration geophysics.

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Expert-level dark matter physics covering observational evidence, candidate particles, detection methods, structure formation, and alternative gravity theories.

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Expert-level cosmology covering the Big Bang, cosmic expansion, dark matter, dark energy, CMB, large-scale structure, and observational cosmology.

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Structural editor that proposes cuts, reorganization, and simplification while preserving comprehension. Use when user requests structural review or editorial review of structure

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Construa agentes de IA prontos para produção com PydanticAI — type-safe tool use, structured outputs, dependency injection, e suporte multi-modelo.

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Reduza o tamanho de LLMs e acelere a inferência usando técnicas de pruning como Wanda e SparseGPT. Use para comprimir modelos sem retreinamento, alcançando 50% de esparsidade com perda mínima de acurácia, ou ativando inferência mais rápida em aceleradores de hardware. Cobre pruning não estruturado, pruning estruturado, esparsidade N:M, pruning por magnitude e métodos one-shot.

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Unity Prefab / Scene / Asset の壊れた参照・Variant override・配線ミスを構造化応答で診断し、 dry-run → confirm 経路で安全に修復するための MCP ツールリファレンス。 Editor Bridge のセットアップ手順もここに含む。 トリガー: .prefab, .unity, .asset, .mat, Prefab, Variant, 配線, 参照, 壊れた参照, broken reference, GUID, fileID, override, パッチ, patch plan, validate refs, validate structure, where-used, inspect variant, inspect wiring, inspect hierarchy, wiring, null参照, null reference, MonoBehaviour, 階層, hierarchy, Transform整合, 孤立, orphan, 重複fileID, duplicate fileID, Editor Bridge, Bridge セットアップ, bridge setup, deploy_bridge, UNITYTOOL_BRIDGE_WATCH_DIR, watch ディレクトリ のいずれかに該当する作業で使用する。

Discover and list all URLs on a website without extracting content, via the Tavily CLI. Use this skill when the user wants to find a specific page on a large site, list all URLs, see the site structure, find where something is on a domain, or says "map the site", "find the URL for", "what pages are on", "list all pages", or "site structure". Faster than crawling — returns URLs only. Essential when you know the site but not the exact page. Combine with extract for targeted content retrieval.

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给定 PMID / PMCID 取结构化全文（BioC XML/JSON）。封装 NLM BioC PubMed API（标题+摘要）和 BioC PMC OA API（开放获取全文），输出按章节切分的段落、表格上下文、RAG 友好 chunk。适合大批量入向量库。触发词：全文抽取 / BioC / RAG 入库 / 文献全文 / PMC 开放获取 / structured fulltext / 段落抽取 / 表格抽取 / fulltext to vector store。

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Structured Domain Modeling Architecture (SDMA) principles. Trigger when: - Designing domain models, building ologs (ontological graphs), verifying protocol equivalence, selecting schemas, or measuring architectural entropy. - Modeling structures using Category Theory, Coalgebra, or Information Theory. - Prompt contains keywords: sdma, olog, Category Theory, Coalgebra, Information Theory, entropy, schema, pullback, functor, monad.

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SOP for structured documentation lifecycle. Trigger when: - Designing, writing, reviewing, or auditing large-scale documentation structures. - Navigating phases: Audit, Plan, Draft, Review, Verify. - Prompt contains: /doc, doc workflow, audit, draft, review, verify, documentation debt.

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Spectral vector search using graph Laplacian eigenstructure. Use when cosine/L2 similarity misses latent structure in your embeddings.

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Builds a structured vulnerability scanning workflow using tools like Nessus, Qualys, and OpenVAS to discover, prioritize, and track remediation of security vulnerabilities across infrastructure. Use when SOC teams need to establish recurring vulnerability assessment processes, integrate scan results with SIEM alerting, and build remediation tracking dashboards.

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Designs and documents structured incident response playbooks that define step-by-step procedures for specific incident types aligned with NIST SP 800-61r3 and SANS PICERL frameworks. Covers playbook structure, decision trees, escalation criteria, RACI matrices, and integration with SOAR platforms. Activates for requests involving IR playbook creation, incident response procedure documentation, response runbook development, or SOAR playbook design.

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Architect redirectors with nginx and Apache, malleable profiles, and OPSEC for resilient C2.

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Deploy and configure the Havoc C2 framework with teamserver, HTTPS listeners, redirectors, and Demon agents for authorized red team operations.

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Analyzes structured and unstructured threat intelligence feeds to extract actionable indicators, adversary tactics, and campaign context. Use when ingesting commercial or open-source CTI feeds, evaluating feed quality, normalizing data into STIX 2.1 format, or enriching existing IOCs with campaign attribution. Activates for requests involving ThreatConnect, Recorded Future, Mandiant Advantage, MISP, AlienVault OTX, or automated feed aggregation pipelines.

日本語の概要は準備中です。原文の説明を表示しています。