Guide alphafold2-pytorch protein sequence, MSA, distogram, angle-logit, coordinate-refinement, recycling, embedding, and structure-utility workflows with version-aware troubleshooting.
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概要と使いどころ
Guide alphafold2-pytorch protein sequence, MSA, distogram, angle-logit, coordinate-refinement, recycling, embedding, and structure-utility workflows with version-aware troubleshooting.
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Iteratively enhance user requirements into clear, complete, actionable specifications through analysis and clarification. Use when: (1) Users provide initial requirements that need refinement, (2) Requirements are vague, incomplete, or ambiguous, (3) Creating formal specifications from informal descriptions, (4) Identifying missing constraints, edge cases, or acceptance criteria, (5) Clarifying assumptions and implicit dependencies, or (6) Preparing requirements for design, implementation, or verification. Operates interactively: analyze → ask clarifying questions → refine based on responses.
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Base template for Stage2 rebuttal refinement. Use when creating or extending conference-specific Stage2 skills so all venues share the same high-quality writing constraints, JSON output format, and normalization rules.
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Multi-stage rebuttal analysis skill for RebuttalStudio. Use when organizing reviewer comments into stage-specific conference workflows, including stage1 breakdown, stage2 refinement, stage4 multi-round follow-up, and stage5 final remarks generation.
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Think and work like an expert Formal Methods Researcher. Use when a task calls for Formal Methods Researcher judgment. Reasons from operational semantics and temporal logics through SPIN/TLA+/PRISM, Coq/Lean/Isabelle, Z3/CVC5, refinement and separation logic, vacuity and false-positive diagnosis, and Dafny/F* versus property-based testing boundaries.
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Use DeepMotion Animate 3D for markerless video-to-3D human motion capture through the cloud portal, sales-gated API, or real-time SDK; covers capture planning, body/hand/face/multi-person limits, custom characters, retargeting, refinement, exports, DCC/game-engine handoff, QA, pricing, privacy, consent, and rights checks.
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Build and operate rights-aware Bria FIBO and FIBO Lite image-generation workflows with structured prompts, reference images, asynchronous status handling, webhooks, cost gates, and safe artifact downloads. Use when a user asks for Bria/FIBO generation, refinement, inspiration, reproducibility, hosted API integration, or a licensed-data image workflow; do not use for FIBO Edit, video, generic image editing, or third-party FIBO gateways.
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Generates 3D conformer ensembles using RDKit ETKDGv3 with knowledge-enhanced distance geometry, MMFF94/UFF force-field optimization, CREST + GFN2-xTB semi-empirical refinement, and macrocycle-aware torsion preferences. Provides explicit decision rules for single vs ensemble conformer use, RMSD pruning, energy windows, conformer count, and force-field choice. Use when preparing 3D ligands for docking, generating descriptor input for 3D QSAR, or sampling macrocycle/peptide conformational ensembles.
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Patterns and techniques for evaluating and improving AI agent outputs. Use this skill when: - Implementing self-critique and reflection loops - Building evaluator-optimizer pipelines for quality-critical generation - Creating test-driven code refinement workflows - Designing rubric-based or LLM-as-judge evaluation systems - Adding iterative improvement to agent outputs (code, reports, analysis) - Measuring and improving agent response quality
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SPARC (Specification, Pseudocode, Architecture, Refinement, Completion) comprehensive development methodology with multi-agent orchestration
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The Socratic spec-refinement front of /feature, and the planning front of /sprint. Routed to BEFORE any code — it turns a one-line idea into a concrete spec with testable criteria, ready for initial combined sprint review or explicit sequential approval. Five gated phases — frame, shape, refine, write, review-and-approve. No implementation before an approved spec; the caller retains required planning, execution and delivery ordering. Each acceptance criterion becomes one tdd Phase 1 obligation.
日本語の概要は準備中です。原文の説明を表示しています。
SPARC (Specification, Pseudocode, Architecture, Refinement, Completion) comprehensive development methodology with multi-agent orchestration
日本語の概要は準備中です。原文の説明を表示しています。
Design well-structured agent loops with best-practice coaching and cross-model review gates before you run them. Use when the user wants to design, build, or set up an agent loop, iterative agent workflow, self-review loop, LLM-as-judge loop, multi-model council, reviewer/judge gate, or goal-driven looping process. Guides goal refinement, typed verification criteria, reviewer/judge selection, privacy boundaries, termination guards, and observability, then emits a RUN_IN_SESSION.md handoff prompt plus portable loop.yaml, loop.resolved.json, LOOP.md, and run-loop.py.
日本語の概要は準備中です。原文の説明を表示しています。
SPARC (Specification, Pseudocode, Architecture, Refinement, Completion) comprehensive development methodology with multi-agent orchestration
日本語の概要は準備中です。原文の説明を表示しています。
Socratic spec refinement — clarify WHAT a phase delivers with ambiguity scoring before discuss-phase. Produces a SPEC.md with falsifiable requirements locked before implementation decisions begin.
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Turn multiview fit reports into a sequential or parallel repair queue for aligning Blender products to source-of-truth templates. Use after validation shows disalignment, when the agent must iteratively fix wireframe, texture, lighting, or projection mismatches, and when skill gaps should trigger self-refinement before another rebuild.
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Independent review loop run before delivery in code work. An independent reviewer (Codex, or fresh Codex-style subagents) reads the whole PR against the approved outcome; the lead fixes in-scope functional findings and re-reviews until none remain. Its differentiator is independence and exhaustiveness — a reviewer that fails differently from the authors, run to clean — distinct from the recursive-refinement ladder. Invoked by the team lead from the unified pre-ship gate (code-mode and /swarm:refine) after the ship steps.
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Naming and classifying organisms through binomial nomenclature, the Linnaean hierarchy, type specimens, and the rules governing taxonomic authority and revision. Covers the structure of a scientific name, the ranks from domain to subspecies, the codes (ICZN, ICN, ICNP), and the modern phylogenetic refinements that reshape the classical system. Use when the task is to place a known organism in its formal hierarchy or to reason about how names change over time.
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Manages skill-creator integration with GSD workflows including skill loading, session observation, bounded learning guardrails, and pattern detection. Use this skill whenever: executing any GSD phase (to ensure relevant skills are loaded first), starting or resuming a work session (to check for pending suggestions), the user asks about skills, patterns, or skill-creator status, performing code changes that might represent repeating patterns, the user corrects Claude's output (highest-signal observation), or when skill refinement, creation, or suggestion review is discussed. Critical for maintaining the adaptive learning layer.
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Vehicle/automotive image editing for cars, trucks, SUVs, motorcycles — car scenes, reflections, tires refinement with snow/mud/grass, segment windshield/wheels/body/windows/hubcaps, atmospheric effects (dust, fog, snow, light leaks, lens flare), and lighting harmonization (hot-day, cold-day, hot-night, cold-night presets). Powered by Bria.ai's dedicated automotive pipeline. Use this skill whenever the user mentions a car, vehicle, truck, SUV, motorcycle, auto photo, car reflections, tire enhancement, muddy tires, vehicle background, automotive marketing, car dealership visual, vehicle configurator, or car scene generation. ALWAYS prefer this skill over general image tools when the subject is a vehicle — faster and more accurate for automotive workflows.
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> Formal oracle for behavioral equivalence via bisimulation games. Triggers: behavioral equivalence check, bisimulation game, are two systems equivalent, did a skill update preserve behavior, attacker-defender game, partition refinement, distinguishing trace. >>>>>>> origin/main
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Knowledge reference for Autonomous Refinement Loop research — pattern research into prerequisites for autonomous execution without synchronous human blocking gates. Defines failure categories, prerequisites, and conditions for replacing human judgment with machine-verifiable checks. Use when designing or evaluating autonomous agent loops, gate conditions, or HOOTL execution patterns.
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Use when all tasks for a feature are marked COMPLETE — runs holistic quality gates including code review, feature verification, integration check, documentation drift audit and update, and context refinement. Creates follow-up plans when issues are found.
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Transform transcript analysis findings into actionable improvements. Triggers on "generate hooks from findings", "improve agent", "fix anti-pattern", "kaizen improvement", "generate hook proposals", or "create improvement plan". Provides templates for hook generation, agent prompt refinement, skill patches, CLAUDE.md updates, and script automation from analysis data.
日本語の概要は準備中です。原文の説明を表示しています。