lisaClust provides a series of functions to identify and visualise regions of tissue where spatial associations between cell-types is similar. This package can be used to provide a high-level summary of cell-type colocalization in multiplexed imaging data that has been segmented at a single-cell resolution.
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bioMate-AI/biomate-bioconductor-kb☆ 7972026年6月21日 更新
This R package supports interactive visualization of multi-channel images and segmentation masks generated by imaging mass cytometry and other highly multiplexed imaging techniques using shiny. The cytoviewer interface is divided into image-level (Composite and Channels) and cell-level visualization (Masks). It allows users to overlay individual images with segmentation masks, integrates well with SingleCellExperiment and SpatialExperiment objects for metadata visualization and supports image do
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bioMate-AI/biomate-bioconductor-kb☆ 7972026年6月21日 更新
EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. Thi
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bioMate-AI/biomate-bioconductor-kb☆ 7972026年6月21日 更新
MsCoreUtils defines low-level functions for mass spectrometry data and is independent of any high-level data structures. These functions include mass spectra processing functions (noise estimation, smoothing, binning, baseline estimation),
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bioMate-AI/biomate-bioconductor-kb☆ 7972026年6月21日 更新
The ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose
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bioMate-AI/biomate-bioconductor-kb☆ 7972026年6月21日 更新
The biovizBase package is designed to provide a set of utilities, color schemes and conventions for genomic data. It serves as the base for various high-level packages for biological data visualization. This saves development effort and enc
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bioMate-AI/biomate-bioconductor-kb☆ 7972026年6月21日 更新
Provides a high-level R interface to CoreArray Genomic Data Structure (GDS) data files. GDS is portable across platforms with hierarchical structure to store multiple scalable array-oriented data sets with metadata information. It is suited
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bioMate-AI/biomate-bioconductor-kb☆ 7972026年6月21日 更新
MHC (major histocompatibility complex) molecules are cell surface complexes that present antigens to T cells. The repertoire of antigens presented in a given genetic background largely depends on the sequence of the encoded MHC molecules, and thus, in humans, on the highly variable HLA (human leukocyte antigen) genes of the hyperpolymorphic HLA locus. More than 28,000 different HLA alleles have been reported, with significant differences in allele frequencies between human populations worldwide
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bioMate-AI/biomate-bioconductor-kb☆ 7972026年6月21日 更新
Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various
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bioMate-AI/biomate-bioconductor-kb☆ 7972026年6月21日 更新
The ggbio package extends and specializes the grammar of graphics for biological data. The graphics are designed to answer common scientific questions, in particular those often asked of high throughput genomics data. All core Bioconductor
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bioMate-AI/biomate-bioconductor-kb☆ 7972026年6月21日 更新
Universal LaTeX document skill: create, compile, and convert any document to professional PDF with PNG previews. Supports resumes, reports, cover letters, invoices, academic papers, theses/dissertations, academic CVs, presentations (Beamer), scientific posters, formal letters, exams/quizzes, books, cheat sheets, reference cards, exam formula sheets, fillable PDF forms (hyperref form fields), conditional content (etoolbox toggles), mail merge from CSV/JSON (Jinja2 templates), version diffing (latexdiff), charts (pgfplots + matplotlib), tables (booktabs + CSV import), images (TikZ), Mermaid diagrams, AI-generated images, watermarks, landscape pages, bibliography/citations (BibTeX/biblatex), multi-language/CJK (auto XeLaTeX), algorithms/pseudocode, colored boxes (tcolorbox), SI units (siunitx), Pandoc format conversion (Markdown/DOCX/HTML ↔ LaTeX), and PDF-to-LaTeX conversion of handwritten or printed documents (math, business, legal, general). Compile script supports pdflatex, xelatex, lualatex with auto-detection, latexmk backend, texfot log filtering, PDF/A output, and verbosity control (--verbose/--quiet). Empirically optimized scaling: single agent 1-10 pages, split 11-20, batch-7 pipeline 21+. Use when user asks to: (1) create a resume/CV/cover letter, (2) write a LaTeX document, (3) create PDF with tables/charts/images, (4) compile a .tex file, (5) make a report/invoice/presentation, (6) anything involving LaTeX or pdflatex, (7) convert/OCR a PDF to LaTeX, (8) convert handwritten notes, (9) create charts/graphs/diagrams, (10) create slides, (11) write a thesis or dissertation, (12) create an academic CV, (13) create a poster, (14) create an exam/quiz, (15) create a book, (16) convert between document formats (Markdown, DOCX, HTML to/from LaTeX), (17) generate Mermaid diagrams for LaTeX, (18) create a formal business letter, (19) create a cheat sheet or reference card, (20) create an exam formula sheet or crib sheet, (21) condense lecture notes/PDFs into a cheat sheet, (22) create a fillable PDF form with text fields/checkboxes/dropdowns, (23) create a document with conditional content/toggles (show/hide sections), (24) generate batch/mail-merge documents from CSV/JSON data, (25) create a version diff PDF (latexdiff) highlighting changes between documents, (26) create a homework or assignment submission with problems and solutions, (27) create a lab report with data tables, graphs, and error analysis, (28) encrypt or password-protect a PDF, (29) merge multiple PDFs into one, (30) optimize/compress a PDF for web or email, (31) lint or check a LaTeX document for common issues, (32) count words in a LaTeX document, (33) analyze document statistics (figures, tables, citations), (34) fetch BibTeX from a DOI, (35) convert a Graphviz .dot file to PDF/PNG, (36) convert a PlantUML .puml file to PDF/PNG, (37) create a one-pager/fact sheet/executive summary, (38) create a datasheet or product specification sheet, (39) extract pages from a PDF (page ranges, odd/even), (40) check LaTeX package availability before compiling, (41) analyze citations and cross-reference with .bib files, (42) debug LaTeX compilation errors, (43) make a document accessible (PDF/A, tagged PDF), (44) create lecture notes or course handouts, (45) fill an existing PDF form (fillable fields or non-fillable with annotations), (46) extract text or tables from a PDF (pdfplumber, pypdf), (47) OCR a scanned PDF to text (pytesseract), (48) create a PDF programmatically with reportlab (Canvas, Platypus), (49) rotate or crop PDF pages (pypdf), (50) add a watermark to an existing PDF, (51) extract metadata from a PDF (title, author, subject).
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ndpvt-web/latex-document-skill☆ 7862026年10月13日 更新
Create high-quality pull requests via gh pr create. Use when the user wants to create a PR, submit a PR, open a pull request, submit for review, or push changes for review. Triggers on: create a pr, create-pr, submit a pr, open a pull request, submit for review, make a pr, gh pr create.
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ReflexioAI/claude-smart☆ 7832026年10月14日 更新
Build crafted, highly detailed, interactive isometric SVG figures that explain a technical idea as a real physical object (a test rig, a dial gauge, a cabinet of drawers, a plotter, a lock), with many small precise solid parts, four-tone shading, correct painter's order, a framed card with title, hint and live readout, and calm eased motion. Use this whenever someone wants an isometric illustration, an explanatory diagram or figure for docs, a blog post, a landing page or an article, a "Linear-style" or "premium" technical drawing, an interactive explainer, or an SVG that shows how a system, algorithm or component works, even if they never say "isometric". Works framework-free (TypeScript/JS that writes SVG and HTML) and in React/Next.js, and can add realistic WebGL shaders (fire, exhaust, water, caustics, lamp light) that live inside the drawing in the same isometric perspective.
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aeonfun/aeon☆ 7742026年10月14日 更新
Turn any skill in this instance into a publish-ready launch article - proof-stat headline, one contrarian thesis, mechanics, war stories from real run history, a mental-model reframe, and the full SKILL.md embedded verbatim so readers can steal it. Optional Higgsfield title banner with --banner.
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aeonfun/aeon☆ 7742026年10月14日 更新
Cross-skill signal detector - finds entities or themes surfaced independently by 3+ different skill categories within 48h and surfaces them as high-confidence write opportunities
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aeonfun/aeon☆ 7742026年10月14日 更新
Monitor Polymarket and/or Kalshi prediction markets for 24h price moves, volume changes, fresh comments, and high-conviction alerts
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aeonfun/aeon☆ 7742026年10月14日 更新
Generate high-performing headline variations across different angles. Trigger on "headlines", "hooks", "ad copy", "email subject lines".
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realkimbarrett/advertising-skills☆ 7642026年3月26日 更新
Use when you need to turn a product or service into a compelling, high-converting offer. Trigger on "offer", "why would someone buy", "improve conversions", "value proposition".
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realkimbarrett/advertising-skills☆ 7642026年3月26日 更新
Diagnose why campaigns are underperforming. Trigger on "low performance", "high CPL", "bad ads".
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realkimbarrett/advertising-skills☆ 7642026年3月26日 更新
Profitable niche discovery for Amazon sellers. Identifies underserved markets with high demand but low competition. Analyzes market gaps, emerging segments, and untapped opportunities across categories. Use when the user asks about finding niches, profitable markets, underserved segments, market gaps, blue ocean opportunities, niche research, or what markets to enter on Amazon.
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nexscope-ai/Amazon-Skills☆ 7632026年8月26日 更新
Don't over-equip an agent with tools/MCP servers. More tools = more ways to fail and a higher cognitive load. Use when wiring tools or an agent underperforms.
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Archive228/loopkit☆ 7552026年7月15日 更新
Designs irresistible Grand Slam Offers using Alex Hormozi's value equation, obstacle-solution mapping, value-cost trim/stack, and offer-naming patterns. Use when fixing low conversion rates, packaging products, pricing services, designing high-converting offers, or when prospects browse but don't buy. Covers value stacking, guarantees, scarcity, urgency, and pricing psychology for validated markets.
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getagentseal/founder-playbook☆ 7522026年10月7日 更新
Write high-quality JUnit 5 tests with AssertJ assertions. Use when user says "add tests", "write tests", "improve test coverage", or when reviewing/creating test classes for Java code.
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decebals/claude-code-java☆ 7502026年9月7日 更新
Create high-converting landing page copy and structure. Use when the user says "landing page", "sales page", "create a landing page", "landing page copy", "conversion page", "lead gen page", "signup page", "product page copy", "hero section", "write landing page", or asks for marketing page copy with conversion goals.
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OpenClaudia/openclaudia-skills☆ 7152026年10月11日 更新